Job Description P39315 Confidence 99.96% Date Thu Jan 5 11:59:18 GMT 2012 Rank 26 Aligned Residues 256 % Identity 14% Template c2q1uA_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase; PDBTitle: crystal structure of the bordetella bronchiseptica enzyme wbmf in2 complex with nad+ and udp Resolution 1.70 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.				.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.																																				.
Query SS confidence																																											.	.	.																																				.
Query Sequence		I	A	I	T	G	A	T	G	Q	L	G	H	Y	V	I	E	S	L	M	K	T	V	P	A	S	Q	I	V	A	I	V	R	N	P	A	K	A	Q	A	L	A	.	.	.	A	Q	G	I	T	V	R	Q	A	D	Y	G	D	E	A	A	L	T	S	A	L	Q	G	V	E	K	L	L	L	I	S	S	S	E	V	.
Query Conservation																																											.	.	.																																				.
Alig confidence																							.	.																			.	.	.																																				.
Template Conservation																							.	.
Template Sequence		V	M	V	V	G	G	A	G	F	V	G	S	N	L	V	K	R	L	L	E	L	.	.	G	V	N	Q	V	H	V	V	D	N	L	L	S	A	E	K	I	N	V	P	D	H	P	A	V	R	F	S	E	T	S	I	T	D	D	A	L	L	A	S	L	Q	D	E	Y	D	Y	V	F	H	L	A	T	Y	H	G	N
Template Known Secondary structure						T	T	T	S													T	.	.	T		S									S	S			G	G	G	S				T	T						S		T	T										S			S
Template Predicted Secondary structure																							.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
													78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	G	Q	R	A	P	Q	H	R	N	V	I	N	A	A	K	A	A	G	V	K	F	I	A	Y	T	S	L	L	H	A	D	T	S	P	L	G	L	A	D	E	H	I	E	T	E	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	S	S	I	H	D	P	L	A	D	H	E	N	N	T	L	T	T	L	K	L	Y	E	R	L	K	H	F	K	R	L	K	K	V	V	Y	S	A	A	G	E	E	T	D	I	V	S	L	H	N	N	D	S	P	Y	S	M	S	K	I	F	G	E	F	Y	S	V	Y	Y	H	K	Q	H	Q	L	P	T	V	R	A
Template Known Secondary structure																T											T	T		S	S																		S	S				S
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
											124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	M	L	A	D	S	G	I	V	Y	T	L	L	R	N	G	W	Y	S	E	N	Y	L	A	S	A	P	A	A	L	E	H	G	V	F	I	G	A	A	G	D	G	K	I	A	S	A	T	R	A	D	Y	A	A	A	A	A	R	V	I	S	E	A	G	H	E	G	K	V	Y	E	L
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																																																													.
Template Conservation																																																																							.
Template Sequence		R	F	Q	N	V	Y	G	P	G	E	I	L	G	A	G	R	W	R	G	T	P	A	T	V	W	R	N	V	T	P	T	F	I	Y	K	A	L	K	G	M	P	L	P	L	E	N	G	G	V	A	T	R	D	F	I	F	V	E	D	V	A	N	G	L	I	A	C	A	A	.	D	G	T	P	G	G	V	Y	N	I
Template Known Secondary structure									T	T			T	T		S	S			S	S	G	G	G	T	S													T	T						S	G	G	G																						.				T	T
Template Predicted Secondary structure																																																																							.
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		A	G	D	S	A	W	T	L	T	Q	L	A	A	E	L	T	K	Q	S	G	K	Q	V	T	Y	Q	N	L	S	E	A	D	F	A	A	A	L	K	S	V	G	L	P	D	G	L	A	D	M	L	A	D	S	D	V	G	A	S	K	G	G	L	F	D	D	S	K	T	L	S	K	L	I	G	H	P	T	T	.	T
Query Conservation																																																																																.
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	S	G	K	E	T	S	I	A	D	L	A	T	K	I	N	E	I	T	G	N	N	T	E	L	D	R	L	P	K	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	W	D	N	S	G	K	R	F	G	S	P	E	K	A	R	R	E	L	G	F	S	A	D	V	S
Template Known Secondary structure																					T												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	S	T	T
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.																								.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		274	.	.	.	.	.	280	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	E	S	V	S	H	L	F	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	D	D	G	L	R	K	T	I	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.	.	.	.	330	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions