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Job DescriptionP39315
Confidence99.95%DateThu Jan 5 11:59:18 GMT 2012
Rank42Aligned Residues253
% Identity13%Templatec2pk3B_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:gdp-6-deoxy-d-lyxo-4-hexulose reductase; PDBTitle: crystal structure of a gdp-4-keto-6-deoxy-d-mannose reductase
Resolution1.82 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60..... ....70.......
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Query Sequence  IAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQG. . VEKLLLISSSEV. .
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Template Sequence  ALITGVAGFVGKYLANHLTEQ. . NVEVFGTSRNNEA. . . . KLPNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAKSSVK
Template Known Secondary structure  TTTSTT..T
S
TT
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TT

TT


S

S


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   3......10.........20... ......30...... ...40.........50.........60.........70......
 
   78.80.........90.........100.........110..... ....120.........130
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Query Sequence  . . . . . . . . . . . GQRAPQHRNVINAAKAAGVKFIAYTSLLHADTSPLGLA. . . . . . . . . . . . . . . . DEHIETEKMLADSGI
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Template Sequence  DSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEENQLRPMSPYGVSKASVGMLARQYVK
Template Known Secondary structure  TT
T


GGGTBS

GGG
SB
TTS

B

S
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   77..80.........90.........100.........110.........120.........130.........140.........150......
 
   131........140.........150. ........160.........170.........180.........190...
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Query Sequence  VYTLLRNGWYSENYLASAPAA. . . . . . . . . . . . . . . . . LEHGVFIGAAGDGKIASATRADYAAAAARVISEAGHEGKVYE
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Template Sequence  AYGMDIIHTRTFNHIGPGQSLGFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQAYWLL. SQYGKTGDVYN
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TT

SSSTTSS
S

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TT
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   157..160.........170.........180.........190.........200.........210.........220.... .....230.....
 
   194.....200.........210.........220.........230.........240.........250.........260.........270..
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Query Sequence  LAGDSAWTLTQLAAELTKQSGKQVTYQNLSEADFAAALKSVGLPDGLADMLADSDVGASKGGLFDDSKTLSKLIGHPTT.
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Template Sequence  VCSGIGTRIQDVLDLLLAMANVKIDTELNPLQ. . . . . . . . . . . . . . . . . . . . . . LRPSEVPTLIGSNKRLKDSTGWKPRI
Template Known Secondary structure  S
S
SSS


GGG......................

SS

SB

B






S
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   236...240.........250.........260....... ..270.........280.........290...
 
   273......280...
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Query Sequence  TLAESVSHLFN
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Template Sequence  PLEKSLFEILQ
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   294.....300....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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