Job Description P39315 Confidence 99.95% Date Thu Jan 5 11:59:18 GMT 2012 Rank 44 Aligned Residues 275 % Identity 13% Template c1t2aC_ PDB info PDB header:structural genomics,lyase Chain: C: PDB Molecule:gdp-mannose 4,6 dehydratase; PDBTitle: crystal structure of human gdp-d-mannose 4,6-dehydratase Resolution 1.84 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.				.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.
Query SS confidence																																											.	.	.
Query Sequence		I	A	I	T	G	A	T	G	Q	L	G	H	Y	V	I	E	S	L	M	K	T	V	P	A	S	Q	I	V	A	I	V	R	N	P	A	K	A	Q	A	L	A	.	.	.	A	Q	G	I	T	V	R	Q	A	D	Y	G	D	E	A	A	L	T	S	A	L	Q	G	V	E	K	L	L	L	I	S	S	S	E	V	G
Query Conservation																																											.	.	.
Alig confidence																							.	.																			.	.	.
Template Conservation																							.	.
Template Sequence		A	L	I	T	G	I	T	G	Q	D	G	S	Y	L	A	E	F	L	L	E	K	.	.	G	Y	E	V	H	G	I	V	R	R	S	S	S	F	N	T	G	R	I	E	H	L	Y	N	M	K	L	H	Y	G	D	L	T	D	S	T	C	L	V	K	I	I	N	E	V	K	P	T	E	I	Y	N	L	G	A	Q	S
Template Known Secondary structure						T	T	T	S													T	.	.	T											S	S				T	T	T	G	G	G										T	T															S							S
Template Predicted Secondary structure																							.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.			.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		79	80	.	.																		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.																			.	.	.	.	120	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	R	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	H	R	N	V	I	N	A	A	K	A	A	G	V	K	F	I	A	Y	T	S	L	L	H	A	D	T	S	P	L	G	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	H	I	E	T	E	K
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	V	K	I	S	F	D	L	A	E	Y	T	A	D	V	D	G	V	G	T	L	R	L	L	D	A	V	K	T	C	G	L	I	N	S	V	K	F	Y	Q	A	S	T	S	E	L	Y	G	K	V	Q	E	I	P	Q	K	E	T	T	P	F	Y	P	R	S	P	Y	G	A	A	K	L	Y	A	Y	W	I	V	V	N
Template Known Secondary structure									S									T													T	T		T	T	T									G	G	G	G	S	S		S	S	S	S	B		T	T	S						S
Template Predicted Secondary structure
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.													150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	L	A	D	S	G	I	V	Y	T	L	L	R	N	G	W	Y	S	E	N	Y	L	A	S	A	P	.	.	.	.	.	.	.	.	.	.	.	.	A	A	L	E	H	G	V	F	I	G	A	A	G	D	G	K	I	A	S	A	T	R	A	D	Y	A	A	A	A	A	R	V	I	S	E	A	G	H	E	G	K	V
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.																																					.	.
Template Conservation																																																																												.	.
Template Sequence		F	R	E	A	Y	N	L	F	A	V	N	G	I	L	F	N	H	E	S	P	R	R	G	A	N	F	V	T	R	K	I	S	R	S	V	A	K	I	Y	L	G	Q	L	E	C	F	S	L	G	N	L	D	A	K	R	D	W	G	H	A	K	D	Y	V	E	A	M	W	L	M	L	Q	N	D	.	.	E	P	E	D
Template Known Secondary structure																					T	T	S		T	T	S														T	T	S		S					S		T	T																					S	S	.	.	S
Template Predicted Secondary structure																																																																												.	.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.			.	.	.	270
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	E	L	A	G	D	S	A	W	T	L	T	Q	L	A	A	E	L	T	K	Q	S	G	K	Q	V	T	Y	Q	N	L	S	E	A	D	F	A	A	A	L	K	S	V	G	L	P	D	G	L	A	D	M	L	A	D	S	D	V	G	A	S	K	G	G	L	F	D	D	S	K	T	L	S	K	L	I	G	H	P	T
Query Conservation
Alig confidence																																																			.	.	.
Template Conservation																																																			.	.	.
Template Sequence		F	V	I	A	T	G	E	V	H	S	V	R	E	F	V	E	K	S	F	L	H	I	G	K	T	I	V	W	E	G	K	N	E	N	E	V	G	R	C	K	E	T	G	K	V	H	V	T	V	.	.	.	D	L	K	Y	Y	R	P	T	E	V	D	F	L	Q	G	D	C	T	K	A	K	Q	K	L	N	W	K	P
Template Known Secondary structure							S															T	T	T							S		G	G	G						T	T	T								.	.	.		G	G	G	S		S	S				B			B
Template Predicted Secondary structure																																																			.	.	.
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.				320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		272		.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		T	.	T	L	A	E	S	V	S	H	L	F	N
Query Conservation			.
Alig confidence			.
Template Conservation
Template Sequence		R	V	A	F	D	E	L	V	R	E	M	V	H
Template Known Secondary structure			S
Template Predicted Secondary structure
Template SS confidence
		348	.	350	.	.	.	.	.	.	.	.	.	360

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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