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Job DescriptionP77268
Confidence100.00%DateThu Jan 5 12:27:01 GMT 2012
Rank21Aligned Residues244
% Identity22%Templatec3gd7C_
PDB info PDB header:hydrolaseChain: C: PDB Molecule:fusion complex of cystic fibrosis transmembrane PDBTitle: crystal structure of human nbd2 complexed with n6-2 phenylethyl-atp (p-atp)
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  TQPVLDIQQLHLSFPGFNGDVHALNNVSLQINRGEIVGLVGESGSGKSVTAMLIMRLLPTGSYCVHRGQISLLGEDVLNA
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Template Sequence  SGGQMTVKDLTAKY. . TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT. . . . . . EGEIQIDGVSWDSI
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S

S..STTS

TT

TTSSTT
S......TTSSSS
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   1206...1210......... 1220.........1230.........1240.........1250.........1260... ......1270.......
 
   82.......90.........100.........110.........120.........130.........140.........150.........160.
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Query Sequence  REKQLRQWRGARVAMIFQEPMTALNPTRRIGLQMMDVIRHHQPISRREARAKAIDLLEEMQIPDAVEVMSRYPFELSGGM
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Template Sequence  TLEQWR. . . . KAFGVIPQK. . VFIFSG. TFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGH
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G....GGS

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SS.B
TTS
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TTTT
TTTGGGSTTGGG
B

TTTTTS
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   1278.1280... ......1290.. ...... .1300.........1310.........1320.........1330.........1340.........1350
 
   162.......170.........180.........190.........200.........210.........220.........230.........240.
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Query Sequence  RQRVMIALAFSCEPQLIIADEPTTALDVTVQLQVLRLLKHKARASGTAVLFISHDMAVVSQLCDSVYVMYAGSVIESGVT
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Template Sequence  KQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQ. . . AFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSI
Template Known Secondary structure  TT

SS
...TTTTS
SSGGGSTT
S
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   1351........1360.........1370.........1380.........1390 .........1400.........1410.........1420.......
 
   242.......250.........260...
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Query Sequence  ADVIHHPRHPYTIGLLQCAPEH
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Template Sequence  LELYHYPADRFVAGFIGSPKMN
Template Known Secondary structure 

SBTTSSSS

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   1428.1430.........1440.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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