Job Description P77268 Confidence 100.00% Date Thu Jan 5 12:27:01 GMT 2012 Rank 27 Aligned Residues 231 % Identity 25% Template c3g5uB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding Resolution 3.80 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	I	Q	Q	L	H	L	S	F	P	G	F	N	G	D	V	H	A	L	N	N	V	S	L	Q	I	N	R	G	E	I	V	G	L	V	G	E	S	G	S	G	K	S	V	T	A	M	L	I	M	R	L	L	P	T	G	S	Y	C	V	H	R	G	Q	I	S	L	L	G	E	D	V	L	N	A	R	E	K	Q
Query Conservation
Alig confidence															.																																											.	.	.	.	.
Template Conservation															.																																											.	.	.	.	.
Template Sequence		V	Q	F	S	G	V	V	F	N	Y	P	T	R	.	P	S	I	P	V	L	Q	G	L	S	L	E	V	K	K	G	Q	T	L	A	L	V	G	S	S	G	C	G	K	S	T	V	V	Q	L	L	E	R	F	Y	D	P	.	.	.	.	.	M	A	G	S	V	F	L	D	G	K	E	I	K	Q	L	N	V	Q	W
Template Known Secondary structure												S		G	.	G	G			S			S							S	S	S							S	S	S	T	T									T	T	S	S			.	.	.	.	.	S						S	S	S	S		B	T	S	S
Template Predicted Secondary structure															.																																											.	.	.	.	.
Template SS confidence
		1031	.	.	.	.	.	.	.	.	1040	.	.	.		.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.						.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.									.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.
Query Sequence		L	R	Q	W	R	G	A	R	V	A	M	I	F	Q	E	P	M	T	A	L	N	P	T	R	R	I	G	L	Q	M	M	D	V	I	R	H	H	Q	P	I	S	R	R	E	A	R	A	K	A	I	D	L	L	E	E	M	Q	I	P	D	A	.	.	.	.	.	.	.	.	V	E	V	M	S	R	Y	P	F	E	L
Query Conservation																																																															.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.												.	.	.												.	.	.	.	.																										.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.												.	.	.												.	.	.	.	.
Template Sequence		L	R	.	.	.	.	A	Q	L	G	I	V	S	Q	E	P	I	.	.	.	L	F	D	C	S	I	A	E	N	I	A	.	.	.	.	.	Y	G	D	N	S	R	V	V	S	Y	E	E	I	V	R	A	A	K	E	A	N	I	H	Q	F	I	D	S	L	P	D	K	Y	N	T	R	V	G	D	K	G	T	Q	L
Template Known Secondary structure			T	.	.	.	.	T	S						S	S			.	.	.			S	S	B						T	.	.	.	.	.				S	S																T						S	S	T	T	T	G	G	G		B		S	T	T	S		S	S
Template Predicted Secondary structure				.	.	.	.												.	.	.												.	.	.	.	.
Template SS confidence
		1105	.					.	.	.	1110	.	.	.	.	.	.	.				.	.	1120	.	.	.	.	.	.	.	.						.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	G	M	R	Q	R	V	M	I	A	L	A	F	S	C	E	P	Q	L	I	I	A	D	E	P	T	T	A	L	D	V	T	V	Q	L	Q	V	L	R	L	L	K	H	K	A	R	A	S	G	T	A	V	L	F	I	S	H	D	M	A	V	V	S	Q	L	C	D	S	V	Y	V	M	Y	A	G	S	V	I	E
Query Conservation
Alig confidence																																																	.	.																	.
Template Conservation																																																	.	.																	.
Template Sequence		S	G	G	Q	K	Q	R	I	A	I	A	R	A	L	V	R	Q	P	H	I	L	L	L	D	E	A	T	S	A	L	D	T	E	S	E	K	V	V	Q	E	A	L	D	K	A	R	E	.	.	G	R	T	C	I	V	I	A	H	R	L	S	T	I	Q	N	.	A	D	L	I	V	V	I	Q	N	G	K	V	K	E
Template Known Secondary structure																				S	S					S		S	S	S																	S	S	.	.	S	S							S		T	T	G	G	G	S	.		S							T	B
Template Predicted Secondary structure																																																	.	.																	.
Template SS confidence
		1173	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.			1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.		.	.	.	.	1240	.	.	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	V	T	A	D	V	I	H	H	P	R	H	P	Y	T	I	G	L	L	Q	C
Query Conservation
Alig confidence												.					.
Template Conservation												.					.
Template Sequence		H	G	T	H	Q	Q	L	L	A	Q	.	K	G	I	Y	.	F	S	M	V	S	V
Template Known Secondary structure											S	.		S			.
Template Predicted Secondary structure												.					.
Template SS confidence
		1250	.	.	.	.	.	.	.	.	.		1260	.	.	.		.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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