Job Description P77268 Confidence 95.97% Date Thu Jan 5 12:27:01 GMT 2012 Rank 346 Aligned Residues 147 % Identity 16% Template c3dm5A_ PDB info PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. Resolution 2.51 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	G	L	V	G	E	S	G	S	G	K	S	V	T	A	M	L	I	M	R	L	L	P	T	G	S	Y	C	V	H	R	G	Q	I	S	L	L	G	E	D	V	L	N	A	R	E	K	Q	L	R	Q	W	R	G	A	R	V	A	M	I	F	Q	E	P	M	T	A	L	N	P	T	R	R	I	G	L	Q	M	M
Query Conservation
Alig confidence																																	.	.	.	.	.
Template Conservation																																	.	.	.	.	.
Template Sequence		I	L	L	M	V	G	I	Q	G	S	G	K	T	T	T	V	A	K	L	A	R	Y	F	Q	K	R	G	Y	K	V	G	.	.	.	.	.	V	V	C	S	D	T	W	R	P	G	A	Y	H	Q	L	R	Q	L	L	D	R	Y	H	I	E	V	F	G	N	P	Q	E	K	D	A	I	K	L	A	K	E	G	V	D
Template Known Secondary structure									T	T	S	S														T	T	T					.	.	.	.	.							S	S	T											G	G	G	T							T	T
Template Predicted Secondary structure																																	.	.	.	.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.						.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	I	R	H	H	Q	P	I	S	R	R	E	A	R	A	K	A	I	D	L	L	E	E	M	Q	I	P	D	A	V	E	V	M	S	R	Y	P	F	E	L	S	G	G	M	R	Q	R	V	M	I	A	L	A	F	S	C	E	P	Q	L	I	I	A	D	E	P	T	T	A	L	D	V	T	V	Q	L	Q	V	L
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.
Template Sequence		Y	F	K	S	K	G	V	D	I	I	I	.	.	.	.	.	.	.	.	.	.	V	D	T	A	G	R	H	K	E	D	K	A	L	.	.	.	.	.	.	.	.	.	.	I	E	E	M	K	Q	I	S	N	V	I	H	P	H	E	V	I	L	V	I	D	.	.	.	.	.	.	.	G	T	I	G	Q	Q	A	Y
Template Known Secondary structure						T	T		S				.	.	.	.	.	.	.	.	.	.							S	S						.	.	.	.	.	.	.	.	.	.														S								.	.	.	.	.	.	.	G	G	G	G	G	G
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.											.	.	190	.	.	.	.	.	.	.	.	.	200											.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.								.	.	.	.	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	L	K	H	K	A	R	A	S	G	T	A	V	L	F	I	S	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	Q	A	L	A	F	K	E	A	T	P	I	G	S	I	I	V	T	K
Template Known Secondary structure										S		T	T
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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