Job Description P77268 Confidence 100.00% Date Thu Jan 5 12:27:01 GMT 2012 Rank 15 Aligned Residues 232 % Identity 25% Template c3d31B_ PDB info PDB header:transport protein Chain: B: PDB Molecule:sulfate/molybdate abc transporter, atp-binding PDBTitle: modbc from methanosarcina acetivorans Resolution 3.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	D	I	Q	Q	L	H	L	S	F	P	G	F	N	G	D	V	H	A	L	N	N	V	S	L	Q	I	N	R	G	E	I	V	G	L	V	G	E	S	G	S	G	K	S	V	T	A	M	L	I	M	R	L	L	P	T	G	S	Y	C	V	H	R	G	Q	I	S	L	L	G	E	D	V	L	N	A	R	E	K
Query Conservation
Alig confidence													.	.	.	.				.																																								.	.	.	.	.
Template Conservation													.	.	.	.				.																																								.	.	.	.	.
Template Sequence		M	I	E	I	E	S	L	S	R	K	W	.	.	.	.	K	N	F	.	S	L	D	N	L	S	L	K	V	E	S	G	E	Y	F	V	I	L	G	P	T	G	A	G	K	T	L	F	L	E	L	I	A	G	F	H	V	P	D	.	.	.	.	.	S	G	R	I	L	L	D	G	K	D	V	T	D	L	S	P	E
Template Known Secondary structure													.	.	.	.	S	S		.											T	T										T												T	S	S			S	.	.	.	.	.							T	T				T	T	S
Template Predicted Secondary structure													.	.	.	.				.																																								.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.					.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.						.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	R	Q	W	R	G	A	R	V	A	M	I	F	Q	E	P	M	T	A	L	N	P	T	R	R	I	G	L	Q	M	M	D	V	I	R	H	H	Q	P	I	S	R	R	E	A	R	A	K	A	I	D	L	L	E	E	M	Q	I	P	D	A	V	E	V	M	S	R	Y	P	F	E	L	S	G	G	M	R	Q	R
Query Conservation
Alig confidence					.	.	.	.	.	.								.	.																																		.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.								.	.																																		.	.	.	.	.	.	.
Template Sequence		K	H	D	.	.	.	.	.	.	I	A	F	V	Y	Q	N	.	.	Y	S	L	F	P	H	M	N	V	K	K	N	L	E	F	G	M	R	M	K	K	I	K	D	P	K	R	V	L	D	T	A	R	.	.	.	.	.	.	.	D	L	K	I	E	H	L	L	D	R	N	P	L	T	L	S	G	G	E	Q	Q	R
Template Known Secondary structure				T	.	.	.	.	.	.						T	T	.	.					T	T	S																											.	.	.	.	.	.	.		T	T		T	T	T	T	T	S		G	G	G	S
Template Predicted Secondary structure					.	.	.	.	.	.								.	.																																		.	.	.	.	.	.	.
Template SS confidence
		71	.	.							.	.	.	.	.	.	80			.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.								.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	M	I	A	L	A	F	S	C	E	P	Q	L	I	I	A	D	E	P	T	T	A	L	D	V	T	V	Q	L	Q	V	L	R	L	L	K	H	K	A	R	A	S	G	T	A	V	L	F	I	S	H	D	M	A	V	V	S	Q	L	C	D	S	V	Y	V	M	Y	A	G	S	V	I	E	S	G	V	T	A	D	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A	L	A	R	A	L	V	T	N	P	K	I	L	L	L	D	E	P	L	S	A	L	D	P	R	T	Q	E	N	A	R	E	M	L	S	V	L	H	K	K	N	K	L	T	V	L	H	I	T	H	D	Q	T	E	A	R	I	M	A	D	R	I	A	V	V	M	D	G	K	L	I	Q	V	G	K	P	E	E	I
Template Known Secondary structure								T	T	S			S						S	S	S	T	T	S																			T	T								S										S						S	S	S
Template Predicted Secondary structure
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	H	H	P	R	H	P	Y	T	I	G	L	L	Q	C	A	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	E	K	P	V	E	G	R	V	A	S	F	V	G	F	E	N
Template Known Secondary structure			S	S			T	T								S
Template Predicted Secondary structure
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions