Job Description P77268 Confidence 100.00% Date Thu Jan 5 12:27:01 GMT 2012 Rank 42 Aligned Residues 235 % Identity 28% Template c3b5wE_ PDB info PDB header:membrane protein Chain: E: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of eschericia coli msba Resolution 5.30 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	I	Q	Q	L	H	L	S	F	P	G	F	N	G	D	V	H	A	L	N	N	V	S	L	Q	I	N	R	G	E	I	V	G	L	V	G	E	S	G	S	G	K	S	V	T	A	M	L	I	M	R	L	L	P	T	G	S	Y	C	V	H	R	G	Q	I	S	L	L	G	E	D	V	L	N	A	R	E	K	Q
Query Conservation
Alig confidence																	.	.																																								.	.	.	.	.
Template Conservation																	.	.																																								.	.	.	.	.
Template Sequence		V	E	F	R	N	V	T	F	T	Y	P	G	R	D	V	.	.	P	A	L	R	N	I	N	L	K	I	P	A	G	K	T	V	A	L	V	G	R	S	G	S	G	K	S	T	I	A	S	L	I	T	R	F	Y	D	I	.	.	.	.	.	D	E	G	E	I	L	M	D	G	H	D	L	R	E	Y	T	L	A	S
Template Known Secondary structure					S	S		B		B		S	S	S	S		.	.	B	S	S		S							T	T							S	S	T	T	S	S								T	T	T		S			.	.	.	.	.	B	S	S					S	S	S	B	T	T	T	S
Template Predicted Secondary structure																	.	.																																								.	.	.	.	.
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.			.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.						.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.			.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																																																												.	.
Query SS confidence																																																												.	.
Query Sequence		L	R	Q	W	R	G	A	R	V	A	M	I	F	Q	E	P	M	T	A	L	N	P	T	R	R	I	G	L	Q	M	M	D	V	I	R	H	H	Q	P	I	S	R	R	E	A	R	A	K	A	I	D	L	L	E	E	M	Q	I	.	.	P	D	A	V	E	V	M	S	R	Y	P	F	E	L	S	G	G	M	R	Q
Query Conservation																																																												.	.
Alig confidence				.	.	.	.														.	.	.																																					.	.
Template Conservation				.	.	.	.														.	.	.
Template Sequence		L	R	.	.	.	.	N	Q	V	A	L	V	S	Q	N	V	H	L	F	.	.	.	N	D	T	V	A	N	N	I	A	Y	A	R	T	E	Q	Y	S	R	E	Q	I	E	E	A	A	R	M	A	Y	A	M	D	F	I	N	K	M	D	N	G	L	D	T	V	I	G	E	N	G	V	L	L	S	G	G	Q	R	Q
Template Known Secondary structure				.	.	.	.	T	T						S						.	.	.	S	S		B	S	T	T	T	T	S	S	S	S	T	T	S			T	T					T	T	T	T	S	T					T	T	S	S	S	S	S	B					T	T	S		S	S
Template Predicted Secondary structure				.	.	.	.														.	.	.
Template SS confidence
		415	.					.	.	.	420	.	.	.	.	.	.	.	.	.				430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	M	I	A	L	A	F	S	C	E	P	Q	L	I	I	A	D	E	P	T	T	A	L	D	V	T	V	Q	L	Q	V	L	R	L	L	K	H	K	A	R	A	S	G	T	A	V	L	F	I	S	H	D	M	A	V	V	S	Q	L	C	D	S	V	Y	V	M	Y	A	G	S	V	I	E	S	G	V	T	A	D
Query Conservation
Alig confidence																																											.	.																	.
Template Conservation																																											.	.																	.
Template Sequence		R	I	A	I	A	R	A	L	L	R	D	S	P	I	L	I	L	D	E	A	T	S	A	L	D	T	E	S	E	R	A	I	Q	A	A	L	D	E	L	Q	K	.	.	N	R	T	S	L	V	I	A	H	R	L	S	T	I	E	K	.	A	D	E	I	V	V	V	E	D	G	V	I	V	E	R	G	T	H	N	D
Template Known Secondary structure					T					T	S			S							T	T	S	S									T	T					T	T	T	S	.	.	S	S							S	S	G	G	G	T	T	T	.		S	S	B					T	T							S	S	S
Template Predicted Secondary structure																																											.	.																	.
Template SS confidence
		488	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.			.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.		.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	H	H	P	R	H	P	Y	T	I	G	L	L	Q	C
Query Conservation
Alig confidence						.	.
Template Conservation						.	.
Template Sequence		L	L	E	H	.	.	R	G	V	Y	A	Q	L	H	K	M
Template Known Secondary structure					S	.	.		S	S						T	T
Template Predicted Secondary structure						.	.
Template SS confidence
		565	.	.	.			.	570	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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