Job Description P77268 Confidence 100.00% Date Thu Jan 5 12:27:01 GMT 2012 Rank 1 Aligned Residues 251 % Identity 25% Template c2yyzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sugar abc transporter, atp-binding protein; PDBTitle: crystal structure of sugar abc transporter, atp-binding protein Resolution 2.11 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	L	D	I	Q	Q	L	H	L	S	F	P	G	F	N	G	D	V	H	A	L	N	N	V	S	L	Q	I	N	R	G	E	I	V	G	L	V	G	E	S	G	S	G	K	S	V	T	A	M	L	I	M	R	L	L	P	T	G	S	Y	C	V	H	R	G	Q	I	S	L	L	G	E	D	V	L	N	A	R	E
Query Conservation
Alig confidence														.	.	.	.																																												.	.	.	.	.
Template Conservation														.	.	.	.																																												.	.	.	.	.
Template Sequence		P	S	I	R	V	V	N	L	K	K	Y	F	.	.	.	.	G	K	V	K	A	V	D	G	V	S	F	E	V	K	D	G	E	F	V	A	L	L	G	P	S	G	C	G	K	T	T	T	L	L	M	L	A	G	I	Y	K	P	T	.	.	.	.	.	S	G	E	I	Y	F	D	D	V	L	V	N	D	I	P	P
Template Known Secondary structure														.	.	.	.	T	T													T	T								S	T	T	S	S										T	S	S			S	.	.	.	.	.							T	T				T	T	S		G
Template Predicted Secondary structure														.	.	.	.																																												.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.					.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.						.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	L	R	Q	W	R	G	A	R	V	A	M	I	F	Q	E	P	M	T	A	L	N	P	T	R	R	I	G	L	Q	M	M	D	V	I	R	H	H	Q	P	I	S	R	R	E	A	R	A	K	A	I	D	L	L	E	E	M	Q	I	P	D	A	V	E	V	M	S	R	Y	P	F	E	L	S	G	G	M	R	Q
Query Conservation
Alig confidence				.	.	.	.	.	.											.	.																			.																						.	.	.
Template Conservation				.	.	.	.	.	.											.	.																			.																						.	.	.
Template Sequence		K	Y	.	.	.	.	.	.	R	E	V	G	M	V	F	Q	N	Y	.	.	A	L	Y	P	H	M	T	V	F	E	N	I	A	F	P	L	R	A	.	R	R	I	S	K	D	E	V	E	K	R	V	V	E	I	A	R	K	L	L	I	.	.	.	D	N	L	L	D	R	K	P	T	Q	L	S	G	G	Q	Q	Q
Template Known Secondary structure		G	G	.	.	.	.	.	.	T	T						S	S		.	.				T	T	S								G	G	G	S	S	.	S		S					T	T										T	T		.	.	.	G	G	G	T	T	S		G	G	G	S
Template Predicted Secondary structure				.	.	.	.	.	.											.	.																			.																						.	.	.
Template SS confidence
		73	.							.	.	.	.	.	80	.	.	.	.			.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.				.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	M	I	A	L	A	F	S	C	E	P	Q	L	I	I	A	D	E	P	T	T	A	L	D	V	T	V	Q	L	Q	V	L	R	L	L	K	H	K	A	R	A	S	G	T	A	V	L	F	I	S	H	D	M	A	V	V	S	Q	L	C	D	S	V	Y	V	M	Y	A	G	S	V	I	E	S	G	V	T	A	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	V	A	L	A	R	A	L	V	K	Q	P	K	V	L	L	F	D	E	P	L	S	N	L	D	A	N	L	R	M	I	M	R	A	E	I	K	H	L	Q	Q	E	L	G	I	T	S	V	Y	V	T	H	D	Q	A	E	A	M	T	M	A	S	R	I	A	V	F	N	Q	G	K	L	V	Q	Y	G	T	P	D	E
Template Known Secondary structure										T	T			S						S	T	T	T	T	S																												S										S							T	T
Template Predicted Secondary structure
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	H	H	P	R	H	P	Y	T	I	G	L	L	Q	C	A	P	E	H	G	V	P	R	Q	L	L	P	A	I	P	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	Y	D	S	P	K	N	M	F	V	A	S	F	I	G	N	P	P	T	N	F	L	R	D	F	S	V	S	V	E	N	K
Template Known Secondary structure					S		S	B							S	S	S	S														T	T
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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