Job Description P77268 Confidence 95.87% Date Thu Jan 5 12:27:01 GMT 2012 Rank 356 Aligned Residues 154 % Identity 15% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	Q	I	N	R	G	E	I	V	G	L	V	G	E	S	G	S	G	K	S	V	T	A	M	L	I	M	R	L	L	P	T	G	S	Y	C	V	H	R	G	Q	I	S	L	L	G	E	D	V	L	N	A	R	E	K	Q	L	R	Q	W	R	G	A	R	V	A	M	I	F	Q	E	P	M	T	A	L	N	P	T
Query Conservation
Alig confidence																																									.	.	.	.	.
Template Conservation																																									.	.	.	.	.
Template Sequence		A	W	T	P	T	K	G	N	V	I	M	F	V	G	L	Q	G	S	G	K	T	T	T	C	S	K	L	A	Y	Y	Y	Q	R	K	G	W	K	T	C	.	.	.	.	.	L	I	C	A	D	T	F	R	A	G	A	F	D	Q	L	K	Q	N	A	T	K	A	R	I	P	F	Y	G	S	Y	T	E	M	D	P	V
Template Known Secondary structure							S	S								S	T	T	S	S															T	T					.	.	.	.	.							S	S	S														T										S
Template Predicted Secondary structure																																									.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.						.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	I	G	L	Q	M	M	D	V	I	R	H	H	Q	P	I	S	R	R	E	A	R	A	K	A	I	D	L	L	E	E	M	Q	I	P	D	A	V	E	V	M	S	R	Y	P	F	E	L	S	G	G	M	R	Q	R	V	M	I	A	L	A	F	S	C	E	P	Q	L	I	I	A	D	E	P	T	T	A	L	D
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.																							.
Template Conservation												.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.																							.
Template Sequence		I	I	A	S	E	G	V	E	K	F	.	.	.	.	.	.	.	.	.	.	K	N	E	N	F	E	I	I	I	V	D	T	S	G	R	H	K	Q	E	D	S	L	.	.	.	.	.	.	.	.	.	.	F	E	E	M	L	Q	V	A	N	A	I	Q	P	D	N	I	V	Y	V	M	D	A	.	S	I	G	Q	A
Template Known Secondary structure												.	.	.	.	.	.	.	.	.	.			T	T													T	T					.	.	.	.	.	.	.	.	.	.														S								T	.	T			T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.																							.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.											180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.											.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.		.	.	.	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	V	Q	L	Q	V	L	R	L	L	K	H	K	A	R	A	S	G	T	A	V	L	F	I	S
Query Conservation
Alig confidence						.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.
Template Sequence		C	E	A	Q	.	.	.	.	.	.	A	K	A	F	K	D	K	V	D	V	A	S	V	I	V	T
Template Known Secondary structure						.	.	.	.	.	.
Template Predicted Secondary structure						.	.	.	.	.	.
Template SS confidence
		229	230	.	.							.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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