Job Description P77268 Confidence 95.45% Date Thu Jan 5 12:27:01 GMT 2012 Rank 414 Aligned Residues 158 % Identity 14% Template c2j289_ PDB info PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs Resolution 8.0 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	S	L	Q	I	N	R	G	E	I	V	G	L	V	G	E	S	G	S	G	K	S	V	T	A	M	L	I	M	R	L	L	P	T	G	S	Y	C	V	H	R	G	Q	I	S	L	L	G	E	D	V	L	N	A	R	E	K	Q	L	R	Q	W	R	G	A	R	V	A	M	I	F	Q	E	P	M	T	A	L	N
Query Conservation
Alig confidence																																										.	.	.	.
Template Conservation																																										.	.	.	.
Template Sequence		T	L	N	L	A	A	Q	P	P	A	V	V	L	M	A	G	L	Q	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	K	K	.	.	.	.	V	L	V	V	S	A	D	V	Y	R	P	A	A	I	K	Q	L	E	T	L	A	E	Q	V	G	V	D	F	F	P	S	D	V	G	Q	K
Template Known Secondary structure					S		S	S	S	S								S	S	S	S	S	S	T	T	T										T	S	S	S			.	.	.	.			B						S	S	S		S											T	T							S	S
Template Predicted Secondary structure																																										.	.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.					.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	T	R	R	I	G	L	Q	M	M	D	V	I	R	H	H	Q	P	I	S	R	R	E	A	R	A	K	A	I	D	L	L	E	E	M	Q	I	P	D	A	V	E	V	M	S	R	Y	P	F	E	L	S	G	G	M	R	Q	R	V	M	I	A	L	A	F	S	C	E	P	Q	L	I	I	A	D	E	P	T	T	A
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.																						.
Template Conservation																							.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.																						.
Template Sequence		P	V	D	I	V	N	A	A	L	K	E	A	K	L	K	F	Y	D	V	L	L	.	.	.	.	.	.	.	.	.	.	V	D	T	A	G	R	L	H	V	D	E	A	M	.	.	.	.	.	.	.	.	.	.	M	D	E	I	K	Q	V	H	A	S	I	N	P	V	E	T	L	F	V	V	D	.	A	M	T	G
Template Known Secondary structure		T	T													T	T		S				.	.	.	.	.	.	.	.	.	.								S	S					.	.	.	.	.	.	.	.	.	.														S								.	T	T	T	G
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.																						.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.											.	190	.	.	.	.	.	.	.	.	.	200	.											.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.		.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	V	T	V	Q	L	Q	V	L	R	L	L	K	H	K	A	R	A	S	G	T	A	V	L	F	I	S	H
Query Conservation
Alig confidence								.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.
Template Sequence		Q	D	A	A	N	T	.	.	.	.	.	.	A	K	A	F	N	E	A	L	P	L	T	G	V	V	L	T	K
Template Known Secondary structure		G	G	G				.	.	.	.	.	.						T	T		S	S
Template Predicted Secondary structure								.	.	.	.	.	.
Template SS confidence
		227	.	.	230	.	.							.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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