|   |
1 | . | . | . | . | . | . | . | . | 10 | . | |
. | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | |
. | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | |
|
|
|
Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
| . |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |
|
|
|
|
|
|
| . |
|
|  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
| . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
Query Sequence |   |
M | K | S | V | V | N | D | T | D | G | I | . |
V | R | V | A | E | S | V | I | P | E | I | K | H | Q | D | E | V | R | V | K | I | A | S | S | G | L | C | G | S | D | L | P | R | I | F | K | N | G | A | H | Y | . |
Y | P | I | T | L | G | H | E | F | S | G | Y | I | D | A | V | G | S | G | V | D | D | . |
. |
. |
. |
Query Conservation |   |
|
|
|   |
|   |   |   |   |
|   | . |
|   |   |   |   |   |
|   |
|   |   |   |   |   |   |
|
|
|
|
|
|   |
|   |
|
|
|   |   |
|   |   |   |   |   |
|   |   |   |   |   | . |   |
|   |
|   |
|   |
|   |   |
|   |
|
|   |
|
|   |   |
|   |   | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
Template Conservation |   |
  |   |
|   |
|   |   |   |   |
|   |
|
|   |   |   |
|
|
|   |
|   | . |   |   |
|   |
|
|
|
|
|
|   |
|   |
|
|
|   |
|
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|
|   |   |
|   |
|   |   |   |   |
Template Sequence |   |
A | H | A | M | V | L | E | K | F | N | Q | P | L | V | Y | K | E | F | E | I | S | D | . |
I | P | R | G | S | I | L | V | E | I | L | S | A | G | V | C | G | S | D | V | H | M | F | R | G | E | D | P | R | V | P | L | P | I | I | L | G | H | E | G | A | G | R | V | V | E | V | N | G | E | K | R | D | L | N | G | E |
Template Known Secondary structure |   |
 |  |  |  |  | B |
| S | T | T | S |
|
|  |  |  |  |  |  |  |
|
| . |
|
| T | T |
|  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  | T | T |
|
| T | T |
|
| S | S | B |
|
|
|
|  |  |  |  |  |  |  |  |  | S | S |
|
| B |
| T | T | S |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
| . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
6 | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | |
. | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . |
  |
  |   |
|
75 | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | |
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | |
. | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . |
Predicted Secondary structure |   |
. |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  | . |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|
|
Query SS confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
L | H | P | G | D | A | V | A | C | V | P | L | L | P | C | F | T | C | P | E | C | L | K | G | F | Y | . |
. |
. |
. |
. |
. |
. |
. |
. |
S | Q | C | A | K | Y | D | F | I | G | S | R | R | D | G | G | F | A | E | Y | I | V | V | . |
K | R | K | N | V | F | A | L | P | T | D | M | P | I | E | D | G | A | F | I |
Query Conservation |   |
. |   |   |
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
Template Conservation |   |
  |   |   |   |
|   |   |
|   |   |   |   |   |   |   |
|
|   |
|   |   |
|   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|   |   |   |
|   |
|   |   |   |
|   |   |
|
|   |   |
|   |   |   |
| . | . | . | . |
Template Sequence |   |
L | L | K | P | G | D | L | I | V | W | N | R | G | I | T | C | G | E | C | Y | W | C | K | V | S | K | E | P | Y | L | C | P | N | R | K | V | Y | G | I | N | R | G | C | S | E | Y | P | H | L | R | G | C | Y | S | S | H | I | V | L | D | P | E | T | D | V | L | K | V | S | E | K | I | T | H | R | L | . |
. |
. |
. |
Template Known Secondary structure |   |
B |
|
| T | T |
|  |  |  |  |
| S |  |  |
|
| S | S | S |  |  |  |  | T | S |
|
| G | G | G |
| T | T |
|  |  | T | T | T | T |
|
| S | S | S | T | T |
|
|
| S | S | S | B | S |  |  |  |  |
| T | T |
|
|  |  |  |  |
|
|
|
|
|  |  |  | . | . | . | . |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|  |  |  |
|  |  |  |
|
|
|
|
|
|  |  |  | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
85 | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | |
|
|
|
  |
  |   |
144 | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | P | I | T | V | G | L | H | A | F | H | L | A | Q | G | C | E | N | K | N | V | I | I | I |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
Alig confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. |
|   |   |
|
|   |   |
|
|   |   |
|   |   |   |   |
|   |   |
|   |
|   |
Template Sequence |   |
. |
P | L | K | E | A | N | K | A | L | E | L | M | E | S | R | E | A | L | K | V | I | L | Y |
Template Known Secondary structure |   |
. |  | G | G | G |  |  |  |  |  |  |  |  |  |  | T | S |
| S |
|  |  |  |  |
Template Predicted Secondary structure |   |
. |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
343 | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . |
  |