Job Description P61949 Confidence 100.00% Date Thu Jan 5 12:07:27 GMT 2012 Rank 4 Aligned Residues 169 % Identity 42% Template c2wc1A_ PDB info PDB header:electron transport Chain: A: PDB Molecule:flavodoxin; PDBTitle: three-dimensional structure of the nitrogen fixation2 flavodoxin (niff) from rhodobacter capsulatus at 2.2 a Resolution 2.17 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.									.	.	.	.	.	70	.
Predicted Secondary structure																																.																																			.	.	.	.	.	.	.	.
Query SS confidence																																.																																			.	.	.	.	.	.	.	.
Query Sequence		M	A	I	T	G	I	F	F	G	S	D	T	G	N	T	E	N	I	A	K	M	I	Q	K	Q	L	G	K	D	V	.	A	D	V	H	D	I	A	K	S	S	K	E	D	L	E	A	Y	D	I	L	L	L	G	I	P	T	W	Y	Y	G	E	A	Q	C	.	.	.	.	.	.	.	.	D	W	D	D	F	F	P
Query Conservation																																.																																			.	.	.	.	.	.	.	.
Alig confidence																																.																																			.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	A	K	I	G	L	F	F	G	S	D	T	G	T	T	R	K	I	A	K	Q	I	K	D	M	F	D	D	E	V	M	A	K	P	L	N	V	N	R	A	D	V	A	D	F	M	A	Y	D	F	L	I	L	G	T	P	T	L	G	D	G	Q	L	P	G	L	S	A	N	A	A	S	E	S	W	E	E	F	L	P
Template Known Secondary structure				S								S	S	S											T	T	S		T	T	T	B						G	G	G										S									B	T	T	T	B		S	S	G	G	G	T		S	S							G	G
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	E	E	I	D	F	N	G	K	L	V	A	L	F	G	C	G	D	Q	E	D	Y	A	E	Y	F	C	D	A	L	G	T	I	R	D	I	I	E	P	R	G	A	T	I	V	G	H	W	P	T	A	G	Y	H	F	E	A	S	K	G	L	A	D	D	D	H	F	V	G	L	A	I	D	E	D	R	Q	P	E
Query Conservation
Alig confidence																																																																.
Template Conservation																																																																.
Template Sequence		R	I	A	D	Q	D	F	S	G	K	T	I	A	L	F	G	L	G	D	Q	V	T	Y	P	L	E	F	V	N	A	L	F	F	L	H	E	F	F	S	D	R	G	A	N	V	V	G	R	W	P	A	K	G	Y	G	F	E	D	S	L	A	V	.	V	E	G	E	F	L	G	L	A	L	D	Q	D	N	Q	A	A
Template Known Secondary structure		G	G	T	T				T	T											T	T	T		T	T	S	T	T	T											T	T	T										T	T	S			S			T	T		.		T	T			S	S					T	T	T		G	G
Template Predicted Secondary structure																																																																.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	A	E	R	V	E	K	W	V	K	Q	I	S	E	E	L	H	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	P	E	R	L	K	G	W	L	S	L	I	A	A	D	F	G	L
Template Known Secondary structure		G												T					T
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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