Job Description P05052 Confidence 36.16% Date Thu Jan 5 10:58:39 GMT 2012 Rank 462 Aligned Residues 161 % Identity 7% Template c3kccA_ PDB info PDB header:transcription Chain: A: PDB Molecule:catabolite gene activator; PDBTitle: crystal structure of d138l mutant of catabolite gene activator protein Resolution 1.66 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.					30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																							.	.	.	.															.	.
Query SS confidence																							.	.	.	.															.	.
Query Sequence		F	I	C	Q	S	F	D	L	I	I	N	R	R	V	I	S	F	K	K	N	S	.	.	.	.	L	F	I	V	S	D	K	I	R	R	E	L	P	V	.	.	C	P	S	K	L	R	I	V	D	I	D	K	K	T	C	L	S	F	F	I	D	V	N	N	E	L	P	G	K	F	T	L	D	K	N	G	Y	I	A
Query Conservation																							.	.	.	.															.	.
Alig confidence																							.	.	.	.															.	.
Template Conservation
Template Sequence		F	L	S	H	C	H	I	H	K	Y	P	S	K	S	T	L	I	H	Q	G	E	K	A	E	T	L	Y	Y	I	V	K	G	S	V	A	V	L	I	K	D	E	E	G	K	E	M	I	L	S	Y	L	N	Q	G	D	F	I	G	E	L	G	L	F	E	E	G	Q	E	R	S	A	W	V	R	A	K	T	A	C	E
Template Known Secondary structure				T	T	S							T	T						T	T		B																			T	T											T	T				S		T	T	T	T	S	T	T		B			S					S	S
Template Predicted Secondary structure
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.										.
Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.	.	.	.	.
Query Sequence		E	E	E	P	P	L	S	L	V	F	S	L	F	E	G	I	K	I	A	D	S	H	S	L	W	L	K	E	R	L	C	I	S	L	L	A	M	F	K	K	R	E	S	V	N	S	F	I	L	T	N	I	N	T	F	T	C	K	I	T	G	I	I	S	F	N	I	E	R	Q	.	.	.	.	.	.	.	.	.	W
Query Conservation																																																																								.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.																																																		.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.
Template Sequence		V	A	E	I	S	Y	K	K	F	R	Q	L	I	Q	V	.	.	.	.	.	.	N	P	D	I	L	M	R	L	S	A	Q	M	A	R	R	L	Q	V	T	S	E	K	V	G	N	L	A	F	L	L	V	T	G	R	I	A	Q	T	L	L	N	L	A	K	Q	P	D	A	M	T	H	P	D	G	M	Q	I	K	I
Template Known Secondary structure																	.	.	.	.	.	.		T																																										T	S	T	T					T	T
Template Predicted Secondary structure																	.	.	.	.	.	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.							.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	K	D	I	A	E	L	I	Y	T	S	E	S	L	I	K	K	R	L	R	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	R	Q	E	I	G	Q	I	V	G	C	S	R	E	T	V	G	R	I	L	K	M
Template Known Secondary structure											T
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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