Job Description P05052 Confidence 32.53% Date Thu Jan 5 10:58:39 GMT 2012 Rank 488 Aligned Residues 167 % Identity 13% Template c3iwzB_ PDB info PDB header:transcription Chain: B: PDB Molecule:catabolite activation-like protein; PDBTitle: the c-di-gmp responsive global regulator clp links cell-cell signaling2 to virulence gene expression in xanthomonas campestris Resolution 2.30 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.					30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.			.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																							.	.	.	.																				.	.
Query SS confidence																							.	.	.	.																				.	.
Query Sequence		F	I	C	Q	S	F	D	L	I	I	N	R	R	V	I	S	F	K	K	N	S	.	.	.	.	L	F	I	V	S	D	K	I	R	R	E	L	P	V	C	P	S	K	L	.	.	R	I	V	D	I	D	K	K	T	C	L	S	F	F	I	D	V	N	N	E	L	P	G	K	F	T	L	D	K	N	G	Y	I	A
Query Conservation																							.	.	.	.																				.	.
Alig confidence																							.	.	.	.																				.	.
Template Conservation
Template Sequence		F	L	A	H	S	H	R	R	R	Y	P	T	R	T	D	V	F	R	P	G	D	P	A	G	T	L	Y	Y	V	I	S	G	S	V	S	I	I	A	E	E	D	D	D	R	E	L	V	L	G	Y	F	G	S	G	E	F	V	G	E	M	G	L	F	I	E	S	D	T	R	E	V	I	L	R	T	R	T	Q	C	E
Template Known Secondary structure					T	S							S	S						T	T	S	B										S									T	T	S										T	T				S						S			S	B			S					S	S
Template Predicted Secondary structure
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.									.	.
Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.	.	.	.
Query Sequence		E	E	E	P	P	L	S	L	V	F	S	L	F	E	G	I	K	I	A	D	S	H	S	L	W	L	K	E	R	L	C	I	S	L	L	A	M	F	K	K	R	E	S	V	N	S	F	I	L	T	N	I	N	T	F	T	C	K	I	T	G	I	I	S	F	N	I	E	R	Q	.	.	.	.	.	.	.	.	W	H
Query Conservation																																																																								.	.	.	.	.	.	.	.
Alig confidence																																																																								.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	A	E	I	S	Y	E	R	L	Q	Q	L	F	Q	T	S	L	S	P	D	A	P	R	I	L	Y	A	I	G	V	Q	L	S	K	R	L	L	D	T	T	R	K	A	S	R	L	A	F	L	D	V	T	D	R	I	V	R	T	L	H	D	L	S	K	E	P	E	A	M	S	H	P	Q	G	T	Q	L	R	V	S
Template Known Secondary structure																T	T	T	T	T	T																													S														T	T	S	T	T				B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	D	I	A	E	L	I	Y	T	S	E	S	L	I	K	K	R	L	R	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	Q	E	L	A	R	L	V	G	C	S	R	E	M	A	G	R	V	L	K	K
Template Known Secondary structure										T	S
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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