Job Description P05052 Confidence 100.00% Date Thu Jan 5 10:58:39 GMT 2012 Rank 1 Aligned Residues 234 % Identity 19% Template c3gbgA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:tcp pilus virulence regulatory protein; PDBTitle: crystal structure of toxt from vibrio cholerae o395 Resolution 1.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20			.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.
Query SS confidence																					.	.
Query Sequence		D	Y	V	C	S	V	V	F	I	C	Q	S	F	D	L	I	I	N	R	.	.	R	V	I	S	F	K	K	N	S	L	F	I	V	S	D	K	I	R	R	E	L	P	V	C	P	S	K	L	R	I	V	D	I	D	K	K	T	C	L	S	F	F	I	D	V	N	N	E	L	P	G	K	F	T	L	D	K	N	G
Query Conservation																					.	.
Alig confidence																					.	.																																															.	.
Template Conservation																																																																					.	.
Template Sequence		N	D	Y	K	M	F	W	I	D	S	G	I	A	K	L	I	D	K	N	C	L	V	S	Y	E	I	N	S	S	S	I	I	L	L	K	K	N	S	I	Q	R	F	S	L	T	S	L	S	D	E	N	I	N	V	S	V	I	T	I	S	D	S	F	I	R	S	L	.	.	K	S	Y	I	L	G	N	K	D	L	L
Template Known Secondary structure		S	S							S	S	S							T	T	T	T							T	T							T	T												S	S																		.	.
Template Predicted Secondary structure																																																																					.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.			.	.	.	.	.	100	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	I	A	E	E	E	P	P	L	S	L	V	F	S	L	F	E	G	I	K	I	A	D	S	H	S	L	W	L	K	E	R	L	C	I	S	L	L	A	M	F	K	K	R	E	S	V	N	S	F	I	L	T	N	I	N	T	F	T	C	K	I	T	G	I	I	S	F	N	I	E	R	Q	W	H	L	K	D	I	A
Query Conservation
Alig confidence																																										.	.	.
Template Conservation																																										.	.	.
Template Sequence		L	W	N	C	E	H	N	D	I	A	V	L	S	E	V	V	N	G	F	R	E	I	N	Y	S	D	E	F	L	K	V	F	F	S	G	F	F	S	K	V	.	.	.	E	K	K	Y	N	S	I	F	I	T	D	D	L	D	A	M	E	K	I	S	C	L	V	K	S	D	I	T	R	N	W	R	W	A	D	I	C
Template Known Secondary structure							S	S										T	T	T	S	S																				.	.	.	T	T	T	S	S	S		S	S			T	T													T	T	T	S
Template Predicted Secondary structure																																										.	.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.				.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	I	Y	T	S	E	S	L	I	K	K	R	L	R	D	E	G	T	S	F	T	E	I	L	R	D	T	R	M	R	Y	A	K	K	L	I	T	S	N	S	Y	S	I	N	V	V	A	Q	K	C	G	Y	N	S	T	S	Y	F	I	C	A	F	K	D	Y	Y	G	V	T	P	S	H	Y	F	E	K	I	I	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E	L	R	T	N	R	M	I	L	K	K	E	L	E	S	R	G	V	K	F	R	E	L	I	N	S	I	R	I	S	Y	S	I	S	L	M	K	T	G	E	F	K	I	K	Q	I	A	Y	Q	S	G	F	A	S	V	S	Y	F	S	T	V	F	K	S	T	M	N	V	A	P	S	E	Y	L	F	M	L	T	G
Template Known Secondary structure					T												T	T	T																						T											T	T		S														S	S									T	S
Template Predicted Secondary structure
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		240
Predicted Secondary structure
Query SS confidence
Query Sequence		V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		273

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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