Job Description P0CF27 Confidence 13.30% Date Thu Jan 5 11:30:49 GMT 2012 Rank 20 Aligned Residues 102 % Identity 11% Template c3l2tB_ PDB info PDB header:recombination/dna Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of the prototype foamy virus (pfv) intasome in2 complex with magnesium and mk0518 (raltegravir) Resolution 2.85 Å

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		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110																.	.	.	.	.
Predicted Secondary structure																																														.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	K	S	R	Q	R	W	L	F	Y	A	Y	D	R	L	R	K	T	V	V	A	H	V	F	G	E	R	T	M	A	T	L	G	R	L	M	S	L	L	S	P	F	D	V	.	V	I	W	M	T	D	G	W	P	L	Y	E	S	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	G	K	L	H
Query Conservation																																														.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																														.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	S	Q	G	Y	L	Y	V	L	V	V	V	D	G	M	T	G	F	T	W	L	Y	P	T	K	A	P	S	T	S	A	T	V	K	S	L	N	V	L	T	S	I	A	I	P	K	V	I	H	S	D	Q	G	A	A	F	T	S	S	T	F	A	E	W	A	K	E	R	G	I	H	L	E	F	S	T	P	Y	H	P
Template Known Secondary structure			B	T	T	B									T	T	T									S	S	S	S												T	T	T				S												S										T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		V	I	S	K	R	Y	T	Q	R	I	E	R	H	N	L	N	L	R	Q	H	L	A	R	L	G	R	K	S	L	S	F	.	S	K	S	V	E	Q	H	D	K	V	I
Query Conservation																																	.
Alig confidence					.	.	.	.																									.
Template Conservation					.	.	.	.
Template Sequence		Q	S	S	.	.	.	.	G	K	V	E	R	K	N	S	D	I	K	R	L	L	T	K	L	L	V	G	R	P	T	K	W	Y	D	L	L	P	V	V	Q	L	A	L
Template Known Secondary structure					.	.	.	.																			T	T	S	T	T		G	G	G	G
Template Predicted Secondary structure					.	.	.	.
Template SS confidence
		215	.	.					.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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