Job Description P0CF27 Confidence 47.68% Date Thu Jan 5 11:30:49 GMT 2012 Rank 16 Aligned Residues 98 % Identity 14% Template c3hpgC_ PDB info PDB header:transferase Chain: C: PDB Molecule:integrase; PDBTitle: visna virus integrase (residues 1-219) in complex with ledgf2 ibd: examples of open integrase dimer-dimer interfaces Resolution 3.28 Å

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		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110																	.	.	.	.	.	.	.
Predicted Secondary structure																																								.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	Q	R	W	L	F	Y	A	Y	D	R	L	R	K	T	V	V	A	H	V	F	G	E	R	T	M	A	T	L	G	R	L	M	S	L	L	S	P	.	F	D	V	V	I	W	M	T	D	G	W	P	L	Y	E	S	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	G	K	L	H	V	I
Query Conservation																																								.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																								.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	D	K	I	I	L	V	W	V	E	T	N	S	G	L	I	Y	A	E	R	V	K	G	E	T	G	Q	E	F	R	V	Q	T	M	K	W	Y	A	M	F	A	P	K	S	L	Q	S	D	N	G	P	A	F	V	A	E	S	T	Q	L	L	M	K	Y	L	G	I	E	H	T	T	G	I	P	W	N	P	Q	S	Q
Template Known Secondary structure		S	S									T	T	T									S																		S			S						S																	T						S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	K	R	Y	T	Q	R	I	E	R	H	N	L	N	L	R	Q	H	L	A	R	L	G	R	K	S	L	S	F	S	K	S	V	E	Q	H	D	K	V	I
Query Conservation
Alig confidence				.	.	.	.	.
Template Conservation				.	.	.	.	.
Template Sequence		A	L	.	.	.	.	.	V	E	R	T	H	Q	T	L	K	N	T	L	E	K	L	I	P	M	F	N	A	F	E	S	A	L	A	G	T	L	I	T	L
Template Known Secondary structure				.	.	.	.	.																G	G	G		S	S
Template Predicted Secondary structure				.	.	.	.	.
Template SS confidence
		151	.						.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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