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Job DescriptionP0CF27
Confidence95.02%DateThu Jan 5 11:30:49 GMT 2012
Rank4Aligned Residues110
% Identity16%Templatec1ex4A_
PDB info PDB header:viral proteinChain: A: PDB Molecule:integrase; PDBTitle: hiv-1 integrase catalytic core and c-terminal domain
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   42.......50.........60.........70..... ....80.........90.........100.........110 ...
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Query Sequence  EMDEQWGYVGAKSRQRWLFYAYDRLRKTVVAHVF. GERTMATLGRLMSLLSPFDVVIWMTDGWPLYESRL. . . . . . . KGK
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Template Sequence  QLD. . CTHLEGK. . . . VILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTGATVRAACDWAGI
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   62.. .....70. ........80.........90.........100.........110.........120.........130.....
 
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Query Sequence  LHVISKRYTQR. IERHNLNLRQHLARLGRKSLSFSKSVEQHDKVI
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Template Sequence  KQEDGIPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIH
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   136...140.........150.........160.........170.........180
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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