 |
Job Description | P0A8G0 | Confidence | 85.15% | Date | Thu Jan 5 11:07:45 GMT 2012 |
Rank | 99 | Aligned Residues | 53 |
% Identity | 17% | Template | d1jiha2 |
SCOP info | DNA/RNA polymerases
| DNA/RNA polymerases
| Lesion bypass DNA polymerase (Y-family), catalytic domain
|
Resolution | 2.25 |
|
 |
  |   |
557 | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
. | . | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | 600 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
| . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | L | E | T | I | E | G | V | G | P | K | R | R | Q | M | L | L | K | Y | M | G | . |
. |
. |
. |
. |
. |
. |
. |
G | L | Q | G | L | R | N | A | S | V | E | E | I | A | K | V | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
P | G | I | S | Q | G | L | A | E | K | I | F | W | S | L | K |
Query Conservation |   |
  |
|
|   |
|   |
|
|
|   |   |
|   |   |   |
|
|   |   |
|
| . | . | . | . | . | . | . | . |
|   |   |   |
|   |   |
|
|   |
|
|
|   |   |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |
|
|   |   |   |   |
|   |   |
|   |   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |
|   |
|
|
|   |
|   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |
|
|   |   |
|   |
|
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|
Template Sequence |   |
E | I | T | S | F | W | T | L | G | G | V | L | G | K | E | L | I | D | V | L | D | L | P | H | E | N | S | I | K | H | I | R | E | T | W | P | D | N | A | G | Q | L | K | E | F | L | D | A | K | V | K | Q | S | D | Y | D | R | S | T | S | N | I | D | P | L | K | T | A | D | L | A | E | K | L | F | K | L | S | R |
Template Known Secondary structure |   |
| G | G | G | S | G | G | G | S | S |  |  |  |  |  |  |  |  |  | T | T |
|
| S | S | S |  |  |  |  |  |  |  |  | S |
| S |
|  |  |  |  |  |  |  |  |  |  |  |  | T | S | T | T |
|
| T | T | T |
| S | S |
| T | T |
|  |  |  |  |  |  |  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
|
|  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
301 | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|