Job Description P0A8G0 Confidence 48.40% Date Thu Jan 5 11:07:45 GMT 2012 Rank 147 Aligned Residues 57 % Identity 9% Template c2zkqb_ PDB info PDB header:ribosomal protein/rna Chain: B: PDB Molecule:rna expansion segment es3; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Resolution 8.70 Å

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		459	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	P	D	V	I	L	I	D	G	G	K	G	Q	L	A	Q	A	K	N	V	F	A	E	L	D	V	S	W	D	K	N	H	P	L	L	L	G	V	A	K	G	A	D	R	K	A	G	L	E	T	L	F	F	E	P	E	G	E	G	F	S	L	P	P	D	S	P	A	L	H	V	I	Q	H	I
Query Conservation
Alig confidence																								.			.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.
Template Conservation																								.			.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.
Template Sequence		E	P	R	L	L	V	V	T	D	P	R	A	D	H	Q	P	L	T	E	A	S	Y	.	V	N	.	.	.	.	.	.	.	L	P	T	I	A	L	C	N	T	D	.	.	.	.	.	.	.	.	.	.	S	P	L	R	Y	V	D	I	A	I	P	C	N	N	K	G	A	H	S	V	G	L	M
Template Known Secondary structure				S					S		T	T	T	T										.		T	.	.	.	.	.	.	.									T	T	.	.	.	.	.	.	.	.	.	.				T	T		S					S		S	S
Template Predicted Secondary structure																								.			.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140								.	.	.	.	.	.	.	.	.	150											.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions