Job Description P0A8G0 Confidence 55.38% Date Thu Jan 5 11:07:45 GMT 2012 Rank 138 Aligned Residues 207 % Identity 12% Template c2yhaA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:post-transcriptional gene silencing protein qde-2; PDBTitle: crystal structure of the n. crassa qde-2 ago mid-piwi2 domains Resolution 1.85 Å

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		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.			.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.
Query SS confidence																	.	.
Query Sequence		F	I	R	Q	G	K	V	L	G	S	R	S	Y	F	P	.	.	K	V	P	G	G	T	E	L	S	E	V	V	E	T	F	V	G	Q	F	Y	L	Q	G	S	Q	M	R	T	L	P	G	E	I	L	L	D	F	N	L	S	D	K	T	L	L	A	D	S	L	S	E	L	A	G	R	K	I	N	V	Q	T	K	P
Query Conservation																	.	.
Alig confidence																	.	.
Template Conservation
Template Sequence		V	A	R	P	C	R	K	I	E	K	W	T	Y	L	E	L	K	G	S	K	A	N	E	G	V	P	Q	A	M	T	A	F	A	E	F	L	N	R	T	G	I	P	I	N	P	R	F	S	P	G	M	S	M	S	V	P	G	S	E	K	E	F	F	A	K	V	K	E	L	M	S	S	H	Q	F	V	V	V	L	L
Template Known Secondary structure			S	B			S		B		S									S	S																			T	T			B		S												S	S														T		S
Template Predicted Secondary structure
Template SS confidence
		508	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.									.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390																	.	.	.	.		.	.	.	.	.	400	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.
Query SS confidence																				.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.
Query Sequence		R	G	D	R	A	R	Y	L	K	L	A	R	T	N	A	A	T	A	.	.	.	.	.	.	.	.	L	T	S	K	L	S	Q	Q	S	T	V	H	Q	R	L	T	A	L	A	S	V	L	K	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	K	R	.	M	E	C	F	D	I	S	H
Query Conservation																				.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.
Alig confidence																				.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.
Template Conservation
Template Sequence		P	R	K	D	V	A	I	Y	N	M	V	K	R	A	A	D	I	T	F	G	V	H	T	V	C	C	V	A	E	K	F	L	S	T	K	G	Q	L	G	Y	F	A	N	V	G	L	K	V	N	L	K	F	G	G	T	N	H	N	I	K	T	P	I	P	L	L	A	K	G	K	T	M	V	V	G	Y	D	V	T	H
Template Known Secondary structure		S	S	S														T	T	T															S	T	T																T	T		B						S							T	S
Template Predicted Secondary structure
Template SS confidence
		588	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.
											403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.				.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.		.	.	460	.	.	.	.	.			.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																	.	.	.																								.									.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																																	.	.	.																								.									.	.
Query Sequence		.	.	.	.	.	.	.	.	.	T	M	G	E	Q	T	V	A	S	C	V	V	F	D	A	N	G	P	L	R	A	E	Y	R	R	Y	N	I	T	G	I	T	.	.	.	P	G	D	D	Y	A	A	M	N	Q	V	L	R	R	R	Y	G	K	A	I	D	D	S	.	K	I	P	D	V	I	L	I	.	.	D	G
Query Conservation		.	.	.	.	.	.	.	.	.																																	.	.	.																								.									.	.
Alig confidence		.	.	.	.	.	.	.	.	.																.																	.	.	.																								.									.	.
Template Conservation																										.
Template Sequence		P	T	N	L	A	A	G	Q	S	P	A	S	A	P	S	I	V	G	L	V	S	T	I	D	.	Q	H	L	G	Q	W	P	A	M	V	W	N	N	P	H	G	Q	E	S	M	T	E	Q	F	T	D	K	F	K	T	R	L	E	L	W	R	S	N	P	A	N	N	R	S	L	P	E	N	I	L	I	F	R	D	G
Template Known Secondary structure		S				S	S	S	S			T	T	S											S	.	T	T												T	T	T																						S	G	G	G	T	T				S								S
Template Predicted Secondary structure																										.
Template SS confidence
		668	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.		.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.
			468	.	470	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	G	K	G	Q	L	A	Q	A	K	N
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		V	S	E	G	Q	F	Q	M	V	I	K
Template Known Secondary structure				G	G	G
Template Predicted Secondary structure
Template SS confidence
		747	.	.	750	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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