Job Description P76461 Confidence 99.35% Date Thu Jan 5 12:23:06 GMT 2012 Rank 99 Aligned Residues 245 % Identity 22% Template c3lmaC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:stage v sporulation protein ad (spovad); PDBTitle: crystal structure of the stage v sporulation protein ad2 (spovad) from bacillus licheniformis. northeast structural3 genomics consortium target bir6. Resolution 1.99 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	L	G	A	T	V	I	K	A	A	I	E	R	A	K	I	D	S	Q	H	V	D	E	V	I	M	G	N	V	L	Q	A	G	L	G	Q	N	P	A	R	Q	A	L	L	K	S	G	L	A	E	T	V	C	G	F	T	V	N	K	V	C	G	S	G	L	K	S	V	A	L	A	A	Q	A	I	Q	A	G	Q
Query Conservation
Alig confidence																															.	.	.																		.	.	.	.
Template Conservation																															.	.	.																		.	.	.	.
Template Sequence		R	K	L	X	E	D	A	V	Q	S	A	L	S	K	Q	N	L	K	K	E	D	I	D	I	F	L	A	G	D	.	.	.	L	L	N	Q	N	V	T	A	N	Y	V	A	R	H	L	K	I	.	.	.	.	P	F	L	C	L	F	G	A	C	S	T	S	X	E	S	I	A	I	S	S	A	L	I	D	G	G	F
Template Known Secondary structure																T	T			G	G	G		S							.	.	.	T	T		S	S	S	S									T		.	.	.	.								S	T	T															T	T	S
Template Predicted Secondary structure																															.	.	.																		.	.	.	.
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.				.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.					.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	S	I	V	A	G	G	M	E	N	M	S	L	A	P	Y	L	L	D	A	K	A	R	S	G	Y	R	L	G	D	G	Q	V	Y	D	V	I	L	R	D	G	L	M	C	A	T	H	G	Y	H	M	G	I	T	A	E	N	V	A	K	E	Y	G	I	T	R	E	M	Q	D	E	L	A	L	H	S	Q	R	K
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	K	R	A	L	A	A	T	S	S	H	N	A	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S										T	T	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	A	A	I	E	S	G	A	F	T	A	E	I	V	P	V	N	V	V	T	R	K	K	T	F	V	F	S	Q	D	E	F	P	K	A	N	S	T	A	E	A	L	G	A	L	R	P	A	F	D	K	A	G	T	V	T	A	G	N	A	S	G	I	N	D	G	A	A	A	L	V	I	M	E	E	S	A	A	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	Q	F	R	Y	P	T	E	Y	G	G	Q	K	P	G	.	.	.	.	.	.	.	.	.	.	.	T	A	T	S	T	V	T	G	S	G	A	V	V	L	.	.	.	.	.	.	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	T				G	G	G	T					S	.	.	.	.	.	.	.	.	.	.	.	S														.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Template SS confidence
																																		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.												160	.	.	.	.	.	.	.	.	.	170	.	.	.							.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.					.	.	.	.	.	290	.	.	.	.	.	.	.					.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.				.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.														.	.	.	.																										.	.	.
Query SS confidence																				.	.	.	.														.	.	.	.																										.	.	.
Query Sequence		A	A	G	L	T	P	L	A	R	I	K	S	Y	A	S	G	G	V	.	.	.	.	P	P	A	L	M	G	M	G	P	V	P	A	T	.	.	.	.	Q	K	A	L	Q	L	A	G	L	Q	L	A	D	I	D	L	I	E	A	N	E	A	F	A	A	.	.	.	Q	F	L	A	V	G	K	N	L	G	F	D	S
Query Conservation																				.	.	.	.														.	.	.	.																										.	.	.
Alig confidence																				.	.	.	.														.	.	.	.																										.	.	.
Template Conservation
Template Sequence		Q	Q	P	G	G	I	K	I	T	S	A	T	V	G	R	V	I	D	L	G	I	T	D	S	Q	D	X	G	S	A	X	A	P	A	A	A	D	T	I	K	Q	H	L	E	D	L	G	R	T	P	D	D	Y	D	L	I	L	T	G	D	L	S	G	V	G	S	P	I	L	K	D	L	L	K	E	E	G	I	N	V
Template Known Secondary structure		S	S			S												B							T	T																						T			G	G	G		S					S	S																T	T
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
			336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.		.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.														.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure		.																	.																															.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																	.																															.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	E	K	V	N	V	N	G	G	A	I	A	L	G	H	P	I	.	G	A	S	G	A	R	I	L	V	T	L	L	H	A	M	Q	A	R	D	K	T	L	G	L	A	T	L	C	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	Q	G	I	A	M	V	I	E	R
Query Conservation		.																	.																															.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																	.																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	T	K	H	N	D	C	G	L	X	I	Y	T	P	D	S	G	C	A	C	S	A	V	V	T	F	A	H	I	F	K	E	I	E	A	G	R	L	N	R	V	L	V	V	A	T	G	A	L	L	S	P	T	I	I	Q	Q	K	E	S	I	P	C	I	A	H	G	V	V	F	E	R
Template Known Secondary structure		G	G	G				G	G	G	T	S	S																T							T	T	S		S																		T	T
Template Predicted Secondary structure
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions