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Job DescriptionP76461
Confidence99.97%DateThu Jan 5 12:23:06 GMT 2012
Rank45Aligned Residues293
% Identity24%Templatec2uv8C_
PDB info PDB header:transferaseChain: C: PDB Molecule:fatty acid synthase subunit alpha (fas2); PDBTitle: crystal structure of yeast fatty acid synthase with stalled2 acyl carrier protein at 3.1 angstrom resolution
Resolution3.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   910.........20........ .30.........40.... ..... 50.........60
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Query Sequence  AVRTAIGSFNGSLASTSAID. . . . . . . . . LGATVIKAAIERAKID. . . . . SQHVD. . . . EVIMGNVLQAG. . . . . . . . . .
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Template Sequence  AGQIPTG. WNAKTYGISDDIISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDR
Template Known Secondary structure 


TT.

TTTTT

S
TT

SGGGS
GGG

SS

TTT
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   1186...1190.. .......1200.........1210.........1220.........1230.........1240.........1250.........1260....
 
   61........70.........80.........90.........100.........110.........120.......
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Query Sequence  . . . . . . . . . . . . . LGQNPARQALLKSGLAETVCGFTVNKVCGSGLKSVALAAQAIQAGQAQSIVAGGMENMSLAPYLLDA
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Template Sequence  FKDEPVQNDILQESFINTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDFQEEGSFEFG
Template Known Secondary structure  TTT



TTSTTTT


S






GGGTTS
S


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   1265....1270.........1280.........1290.........1300.........1310.........1320.........1330.........1340....
 
   128.130.........140.........150.........160.........170.........180.........190.........200.......
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Query Sequence  KARSGYRLGDGQVYDVILRDGLMCATHGYHMGITAENVAKEYGITREMQDELALHSQRKAAAAIESGAFTAEIVPVNVVT
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Template Sequence  NMKA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TT
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   1345...
 
   208.210.........220.........230.........240.........250.........260.........270.........280.......
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Query Sequence  RKKTFVFSQDEFPKANSTAEALGALRPAFDKAGTVTAGNASGINDGAAALVIMEESAALAAGLTPLARIKSYASGGVPPA
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Template Sequence  . . . . . . . . . . . . . TSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIG
Template Known Secondary structure  .............B

TT

GGGS

TTBTT

SB
BB
T






S
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   13491350.........1360.........1370.........1380.........1390.........1400.........1410.....
 
   288.290...
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Query Sequence  LMGMGP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  RSVPAPGKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREIHN
Template Known Secondary structure  S
TT


SGGGGGG



S

SS

GGG
TTS

S
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   1416...1420.........1430.........1440.........1450.........1460.........1470.........1480.........1490.....
 
   294.....300.........310.........320. ........330.........340..
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . VPATQKALQLAGLQLADIDLIEANEAFA. . . . . . . . AQFLAVGKNLGFDSEKVNVNG
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Template Sequence  EAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINEMMKHLGRSEGNPVIGV
Template Known Secondary structure  TTSTTTT
SSS
TTT

GGG



S
T

TT

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   1496...1500.........1510.........1520.........1530.........1540.........1550.........1560.........1570.....
 
   343... ...350.........360......... 370.........380.........390
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Query Sequence  GAIA. LGHPIGASGARILVTLLHAMQAR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DKTLGLATLCIGGGQGIAMVI
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Template Sequence  FQKFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNVDKILEQFEYVLYPSKTLKTDGVRAVSITSFGFGQKGGQAIV
Template Known Secondary structure 
T
B
GGGTT



TT
SSB
GGGGG
TT

SS

S


TTT
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   1576...1580.........1590.........1600.........1610.........1620.........1630.........1640.........1650.....
 
   391
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Query Sequence  E
Query Conservation 
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Template Conservation   
Template Sequence  V
Template Known Secondary structure 
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Template SS confidence 
   1656
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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