Job Description P76461 Confidence 99.89% Date Thu Jan 5 12:23:06 GMT 2012 Rank 72 Aligned Residues 248 % Identity 13% Template c2f9aA_ PDB info PDB header:transferase Chain: A: PDB Molecule:3-hydroxy-3-methylglutaryl coenzyme a synthase 1; PDBTitle: hmg-coa synthase from brassica juncea in complex with f-244 Resolution 2.51 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.			.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.	.
Query SS confidence																																																																				.	.
Query Sequence		R	T	A	I	G	S	F	N	G	S	L	A	S	T	S	A	I	D	L	G	A	T	V	I	K	A	A	I	E	R	A	K	I	D	S	Q	H	V	D	E	V	I	M	G	N	V	L	Q	A	G	L	G	Q	N	P	A	R	Q	A	L	L	K	S	G	L	A	.	.	E	T	V	C	G	F	T	V	N	K	V	C
Query Conservation																																																																				.	.
Alig confidence																																																																				.	.
Template Conservation
Template Sequence		G	L	G	Q	D	C	L	A	F	C	T	E	L	E	D	V	I	S	M	S	F	N	A	V	T	S	L	L	E	K	Y	K	I	D	P	K	Q	I	G	R	L	E	V	G	S	E	T	V	I	D	K	S	K	S	I	K	T	F	L	M	Q	L	F	E	K	C	G	N	T	D	V	E	G	V	D	S	T	N	A	C
Template Known Secondary structure		T	T										T	T																		T	T			G	G	G												S		S	S	S							T					T	T	T					B						S	G	G
Template Predicted Secondary structure
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.			.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																				.	.
Query SS confidence																				.	.
Query Sequence		G	S	G	L	K	S	V	A	L	A	A	Q	A	I	Q	A	G	Q	.	.	A	Q	S	I	V	A	G	G	M	E	N	M	S	L	A	P	Y	L	L	D	A	K	A	R	S	G	Y	R	L	G	D	G	Q	V	Y	D	V	I	L	R	D	G	L	M	C	A	T	H	G	Y	H	M	G	I	T	A	E	N	V	A
Query Conservation																				.	.
Alig confidence																				.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	G	G	T	A	A	L	L	N	C	V	N	W	V	E	S	N	S	W	D	G	R	Y	G	L	V	I	C	T	D	S	A	V	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		G														T	S	T	T			S														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	Y	G	I	T	R	E	M	Q	D	E	L	A	L	H	S	Q	R	K	A	A	A	A	I	E	S	G	A	F	T	A	E	I	V	P	V	N	V	V	T	R	K	K	T	F	V	F	S	Q	D	E	F	P	K	A	N	S	T	A	E	A	L	G	A	L	R	P	A	F	D	K	A	G	T	V	T	A	G	N
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	G	P	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																																													152	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290																								.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	S	G	I	N	D	G	A	A	A	L	V	I	M	E	E	S	A	A	L	A	A	G	L	T	P	L	A	R	I	K	S	Y	A	S	G	G	V	P	P	A	L	M	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	G	P	V	P	A	T	Q	K	A	L	Q	L
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.
Template Sequence		R	P	T	G	G	A	A	A	I	A	M	L	I	G	P	D	A	P	.	.	.	I	V	F	E	S	K	L	R	G	S	H	M	A	H	V	Y	D	F	Y	K	P	N	L	A	S	E	Y	P	V	V	D	G	K	L	S	Q	T	C	Y	L	M	A	L	D	S	C	Y	K	H	L	C	N	K	F	E	K	L	E	G
Template Known Secondary structure		G	G	G												S	S		S	.	.	.																	S						T	T																																			S
Template Predicted Secondary structure																				.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.				.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.		.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.		.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure																																													.																				.
Query SS confidence																																													.																				.
Query Sequence		A	G	L	Q	L	A	D	I	D	L	I	E	A	N	E	A	F	A	A	Q	F	L	A	V	G	K	N	L	G	F	D	S	E	K	V	N	V	N	G	G	A	I	A	.	L	G	H	P	I	G	A	S	G	A	R	I	L	V	T	L	L	H	A	.	M	Q	A	R	D	K	T	L	G	L	A	T	L	C	I	G
Query Conservation																																													.																				.
Alig confidence																																													.																				.
Template Conservation
Template Sequence		K	E	F	S	I	N	D	A	D	Y	F	V	F	H	S	P	Y	N	K	L	V	Q	K	S	F	A	R	L	L	Y	Y	D	A	K	V	Q	P	T	T	L	V	P	K	Q	V	G	N	M	Y	T	A	S	L	Y	A	A	F	A	S	L	V	H	N	K	H	S	D	L	A	G	K	R	V	V	M	F	S	Y	G	S
Template Known Secondary structure		S				G	G	G		S							S	S																		T	G	G	G											G	G	G														T	T	T		T	T										T
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		382
Predicted Secondary structure
Query SS confidence
Query Sequence		G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		360

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions