Job Description P0AEB2 Confidence 99.02% Date Thu Jan 5 11:22:55 GMT 2012 Rank 69 Aligned Residues 198 % Identity 20% Template c3lo7A_ PDB info PDB header:transferase Chain: A: PDB Molecule:penicillin-binding protein a; PDBTitle: crystal structure of pbpa from mycobacterium tuberculosis Resolution 2.05 Å

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		48	.	50	.	.	.	.	.	.	.	.	.	60	.																																					.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	Y	I	L	I	D	Y	N	S	G	K	V	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	N	A	D	V	R	R	D	P	A	S	L	T	K	M	M	T	S	Y	V	I	G	Q	A	M	K	A	G	K
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template Conservation																																																																									.	.	.
Template Sequence		A	V	V	A	L	E	P	S	T	G	K	I	L	A	L	V	S	S	P	S	Y	D	P	N	L	L	A	S	H	N	P	E	V	Q	A	Q	A	W	Q	R	L	G	D	N	P	A	S	P	L	T	N	R	A	I	S	E	T	Y	P	P	G	S	T	F	K	V	I	T	T	A	A	.	.	.	A	L	A	A	G	A
Template Known Secondary structure								T	T	T		B								S								T		S																T	T		T	T	S		T	T	T	S			B			G	G	G	G								.	.	.				T	T
Template Predicted Secondary structure																																																																									.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.				.	.	.	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	K	E	T	D	L	V	T	I	G	N	D	A	W	A	T	G	N	P	V	F	K	G	S	S	L	M	F	L	K	P	G	M	Q	V	P	V	S	Q	L	I	R	G	I	N	L	Q	S	G	N	D	A	C	V	A	M	A	D	F	A	A	G	S	Q	D	A	F	V	G	L	M	N	S	Y	V	N	A	L	G	L
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.
Template Sequence		T	E	T	E	Q	L	T	A	A	P	T	I	P	L	E	N	Y	P	C	G	D	E	P	T	V	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	E	A	F	V	K	S	C	N	T	A	F	V	Q	L	G	I	R	T	G	.	.	.	.	.	.	A	D	A	L	R	S	M	A	R	A	F	G	L
Template Known Secondary structure			T	T							S	B				B					S	S	S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T														.	.	.	.	.	.											T	T	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.															.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.							.	.	.	.	.	290	.	.	.	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.																				.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	N	T	H	F	Q	T	V	H	G	L	D	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Q	Y	S	S	A	R	D	M	A	L	I	G	Q	A	L	I	R	D	V	P	N	E	Y	S	I	Y	K	E	K	E	F	T	F	N	G	I	R	Q	L	N	R	N	G	L	L	W
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation																																																						.
Template Sequence		D	S	P	P	R	P	T	P	L	Q	V	A	E	S	T	V	G	P	I	P	D	S	A	A	L	G	M	T	S	I	G	Q	K	D	V	A	L	T	P	L	A	N	A	E	I	A	A	T	I	A	N	G	.	G	I	T	M	R	P	Y	L	V	G	S	L	K	G	P	D	L	A	N	I	S	T	T	V	G	Y	Q
Template Known Secondary structure		T	S					S	S	S						B						S								T	T	T		T	T		B	B														T	T	.	T						B	S							T	T
Template Predicted Secondary structure																																																						.
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
		233																													.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.									.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Query Sequence		D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	S	L	N	V	D	G	I	K	T	G	H	T	D	K	A	G	Y	.	.	.	.	.	.	.	.	N	L	V	A	S	A	T	E	G	Q	M	R	L	I	S	A	V	M
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	R	R	A	V	S	P	Q	V	A	A	K	L	T	E	L	M	V	G	A	E	K	V	A	Q	Q	K	G	A	I	P	G	V	Q	I	A	S	K	T	G	T	A	E	H	G	T	D	P	R	H	T	P	P	H	A	W	Y	I	A	F	A	P	A	Q	A	P	K	V	A	V	A	V	L
Template Known Secondary structure						S																			S			T	T			T	T													S	S		T	T	T	S											S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions