Return to main results Retrieve Phyre Job Id

Job DescriptionP0AEB2
Confidence100.00%DateThu Jan 5 11:22:55 GMT 2012
Rank21Aligned Residues230
% Identity16%Templatec3dw0B_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:class a carbapenemase kpc-2; PDBTitle: crystal structure of the class a carbapenemase kpc-2 at 1.62 angstrom resolution
Resolution1.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   48.50.........60.........70.........80.........90.........100.........110.........120.......
Predicted Secondary structure 

































Query SS confidence 















































































Query Sequence  SYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVP
Query Conservation 





  

 

  

 
     

 





   

 
  
 
 

  
 

              
   
  
   
Alig confidence 












.













































......













Template Conservation 

 
 

 

   .  
       


 

 

   
  
  
       
         ......             
Template Sequence  GVYAMDTGSGATV. SYRAEERFPLCSSFKGFLAAAVLARSQQQAGLLDTPIRYGKNALVP. . . . . . WSPISEKYLTTGMT
Template Known Secondary structure  TTT

.STTS

GGGTTSTTTTT



GGG

S......S
TTTT
Template Predicted Secondary structure 




.



















......








Template SS confidence 















































































   45....50....... ..60.........70.........80.........90.........100... ......110.......
 
   128.130.........140.........150.........160.........170....... ..180.........190.........200.
Predicted Secondary structure 












......










Query SS confidence 

















































. . . . . .























Query Sequence  VSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQ. . . . . . TVHGLDADGQYSSARDMALIGQAL
Query Conservation 
 


   

 
 



 



 
 

   

  

  
 



  
 
 ......

 

      


 


 
    
Alig confidence 

























.....


















......























Template Conservation     
    
  
 
 
   
   


.....           
   
                     
      
   
Template Sequence  VAELSAAAVQYSDNAAANLLLKELGG. . . . . PAGLTAFMRSIGDTTFRLDRWELELNSAIPGDARDTSSPRAVTESLQKL
Template Known Secondary structure 

TT.....TT
SS
B



TTGGG


TT

TT
Template Predicted Secondary structure 





.....























Template SS confidence 















































































   119120.........130.........140.... .....150.........160.........170.........180.........190...
 
   202.......210.........220.........230......... 240.........250 ......... 260.........270.......
Predicted Secondary structure 











.



.
.





.
Query SS confidence 





































.










.








.

















.
Query Sequence  IRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVD. GIKTGHTDKAG. YNLVASATE. GQMRLISAVMGGRTFKGR.
Query Conservation      
    
              
 
 

      
 .
 


 
  

.  

  
  . 
   
 



      
.
Alig confidence 


.

































.










.








.

















.
Template Conservation     .              
                   
  



    
     
 
       


 
          
Template Sequence  TLG. SALAAPQRQQFVDWLKGNTTGNHRIRAAVPADWAVGDKTGTCGVYGTANDYAVVWPTGRAPIVLAVYTRAPNKDDK
Template Known Secondary structure  TS.SSS
T
SS
TTTGGGGS
TTS
SSTT

TTS


SSTT

Template Predicted Secondary structure  .







































Template SS confidence 















































































   194.. ...200.........210.........220.........230.........240.........250.........260.........270..
 
   278.280.........290
Predicted Secondary structure  .....
Query SS confidence  . . . . .












Query Sequence  . . . . . EAESKKLLTWGFR
Query Conservation  .....      

   
 
Alig confidence  .....












Template Conservation       
  


 
   
 
Template Sequence  HSEAVIAAAARLALEGLG
Template Known Secondary structure 

TT
Template Predicted Secondary structure 
Template SS confidence 

















   274.....280.........290.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions