Job Description P0AEB2 Confidence 99.95% Date Thu Jan 5 11:22:55 GMT 2012 Rank 43 Aligned Residues 257 % Identity 21% Template c3a3eB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:penicillin-binding protein 4; PDBTitle: crystal structure of penicillin binding protein 4 (dacb)2 from haemophilus influenzae, complexed with novel beta-3 lactam (cmv) Resolution 2.40 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																																																																												.	.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.	.
Query Sequence		N	I	K	T	M	I	P	G	V	P	Q	I	D	A	E	S	Y	I	L	I	D	Y	N	S	G	K	V	L	A	E	Q	N	A	D	V	R	R	D	P	A	S	L	T	K	M	M	T	S	Y	V	I	G	Q	A	M	K	A	G	K	F	K	E	T	D	L	V	T	I	G	N	D	A	W	A	.	.	.	.	.	.
Query Conservation																																																																												.	.	.	.	.	.
Alig confidence																																																											.																	.	.	.	.	.	.
Template Conservation																																																											.
Template Sequence		N	V	S	D	L	T	Q	K	L	P	E	G	S	N	A	G	V	I	A	K	N	I	N	Q	N	Q	I	I	A	D	Y	N	G	S	T	F	M	L	P	A	S	T	Q	K	V	F	T	A	V	A	A	K	L	A	L	G	D	.	Q	F	Q	F	E	T	A	L	L	S	N	G	K	I	Q	N	G	N	L	D	G	N
Template Known Secondary structure								T	T	S		T	T										T	T	T	T							S	T	T			B			G	G	G	G												T		T	.	T											S		B		S	S				S
Template Predicted Secondary structure																																																											.
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.		.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	I	V	S	F	T	G	D	P	D	L	T	R	G	Q	L	Y	S	L	L	A	E	L	K	K	Q	G	I	K	K	I	N	G	D	L	V	L	D	T	S	V	F	P	P	A	A	A	N	I	D	N	N	C	F	Y	A	E	L	D	A	N	K	N	P	G	E	I	V	K	I	N	V	P	A	Q	F	P	I	Q	V
Template Known Secondary structure										S	S																T	T		S				S								B					S	S			S	T	T										S		S	S	S	B							T	T
Template Predicted Secondary structure
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
																																																																								107	.	.	110	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	N	P	V	F	K	G	S	S
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	G	Q	V	Y	V	A	D	S	N	E	A	P	Y	C	Q	L	D	V	V	V	H	D	N	N	R	Y	Q	V	K	G	C	L	A	R	Q	Y	K	P	F	G	L	S	F	A	V	Q	N	T	D	A	Y	A	A	A	I	I	Q	R	Q	L	R	K	L	G	I	E	F	N	G	K	V	L	L	P	Q	K	P	Q	Q
Template Known Secondary structure										S	S	S	S	S	S									G	G	G												S	S									S																	T	T											S	S
Template Predicted Secondary structure
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.								.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.			.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.																				.	.
Query SS confidence																																						.	.	.	.	.	.	.																				.	.
Query Sequence		L	M	F	L	K	P	G	M	Q	V	P	V	S	Q	L	I	R	G	I	N	L	Q	S	G	N	D	A	C	V	A	M	A	D	F	A	A	.	.	.	.	.	.	.	G	S	Q	D	A	F	V	G	L	M	N	S	Y	V	N	A	L	G	L	.	.	K	N	T	H	F	Q	T	V	H	G	L	D	A	D	G	Q
Query Conservation																																						.	.	.	.	.	.	.																				.	.
Alig confidence																																						.	.	.	.	.	.	.																				.	.												.
Template Conservation																																																																													.
Template Sequence		G	Q	L	L	A	K	H	L	S	K	P	L	P	D	L	L	K	K	M	M	K	K	S	D	N	Q	I	A	D	S	L	F	R	A	V	A	F	N	Y	Y	K	R	P	A	S	F	Q	L	G	T	L	A	V	K	S	I	L	Q	K	Q	G	I	R	F	G	N	S	I	L	A	D	G	S	G	L	.	S	R	H	N
Template Known Secondary structure																								T																		S	S		B															T	T	T				T	T		B				S	S	S		.		T	T
Template Predicted Secondary structure																																																																													.
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.		.	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.		.	260	.	.	.	.	.	.
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		Y	S	S	A	R	D	M	A	L	I	G	Q	A	L	I	R	D	V	P	N	E	Y	S	I	Y	K	E	K	E	F	T	F	N	G	I	R	Q	L	N	R	N	G	L	L	W	D	N	S	L	N	V	D	G	I	K	T	G	H	T	D	K	A	G	Y	N	L	V	A	S	A	T	.	E	G	Q	M	R	L	I	S
Query Conservation																																																																									.
Alig confidence																			.																																											.											.
Template Conservation																			.																																											.
Template Sequence		L	V	A	P	K	T	M	L	S	V	L	E	Y	I	A	K	N	.	E	D	K	L	H	L	M	E	T	F	P	I	A	G	V	D	G	T	I	S	G	R	G	G	L	I	S	P	P	L	V	K	N	V	I	A	K	T	G	S	L	K	.	G	V	Y	N	L	A	G	F	M	T	N	A	R	G	E	K	V	A	F
Template Known Secondary structure		B	B															T	.							G	G	G	S		B	T	T	T	S	G	G	G	S	S		G	G	G	S	S	T	T	T	T	T	T									T	.	T											T	T	S
Template Predicted Secondary structure																			.																																											.
Template SS confidence
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.		.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.		.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
		267	.	.	270				.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure						.	.	.
Query SS confidence						.	.	.
Query Sequence		A	V	M	G	.	.	.	G	R	T	F	K	G	R	E	A	E	S	K	K	L	L	T	W	G	F	R	F	F	E
Query Conservation						.	.	.
Alig confidence						.	.	.
Template Conservation
Template Sequence		V	Q	F	I	N	G	Y	S	T	G	D	L	E	S	K	T	K	R	A	P	L	V	Q	F	E	R	N	L	Y	N
Template Known Secondary structure							S				S		T	T
Template Predicted Secondary structure
Template SS confidence
		445	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions