Job Description P0AEB2 Confidence 100.00% Date Thu Jan 5 11:22:55 GMT 2012 Rank 6 Aligned Residues 316 % Identity 25% Template c1tvfA_ PDB info PDB header:penicillin binding Chain: A: PDB Molecule:penicillin binding protein 4; PDBTitle: crystal structure of penicillin-binding protein 4 (pbp4)2 from staphylococcus aureus Resolution 2.00 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	V	P	Q	I	D	A	E	S	Y	I	L	I	D	Y	N	S	G	K	V	L	A	E	Q	N	A	D	V	R	R	D	P	A	S	L	T	K	M	M	T	S	Y	V	I	G	Q	A	M	K	A	G	K	F	K	E	T	D	L	V	T	I	G	N	D	A	W	A	T	G	N	P	V	F	K	G	S	S	L	M
Query Conservation
Alig confidence																																																																										.	.
Template Conservation																																																																										.	.
Template Sequence		A	G	L	S	A	A	Y	E	P	T	S	A	V	N	V	S	Q	T	G	Q	L	L	Y	Q	Y	N	I	D	T	K	W	N	P	A	S	M	T	K	L	M	T	M	Y	L	T	L	E	A	V	N	K	G	Q	L	S	L	D	D	T	V	T	M	T	N	K	E	Y	I	M	S	T	L	.	.	P	E	L	S	N	T
Template Known Secondary structure		T	T			G	G	G			S							T	T	S	B						S	T	T			B			G	G	G															T	T	S	S		T	T													T	T		.	.	T	T	S
Template Predicted Secondary structure																																																																										.	.
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.			.	.	.	.	.	.
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.															.
Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	L	K	P	G	M	Q	V	P	V	S	Q	L	I	R	G	I	N	L	Q	S	G	N	D	A	C	V	A	M	A	D	F	A	A	G	S	Q	D	A	F	V	G	L	M	N	S	Y	V	N	A	L	G	L	K	N	T	H	F	Q	T	V	H	G	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A
Query Conservation																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	L	Y	P	G	Q	V	W	T	I	A	D	L	L	Q	I	T	V	S	N	S	S	N	A	A	A	L	I	L	A	K	K	V	S	K	N	T	S	D	F	V	D	L	M	N	N	K	A	K	A	I	G	M	K	N	T	H	F	V	N	P	T	G	A	E	N	S	R	L	R	S	F	A	P	T	K	Y	K	D	Q
Template Known Secondary structure					T	T															S														S	S	S															T	T		T	T		B		S	S	S	S	S	S						G	G	G	S		G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.				.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																																																			.	.	.
Query SS confidence																																																			.	.	.
Query Sequence		D	G	Q	Y	S	S	A	R	D	M	A	L	I	G	Q	A	L	I	R	D	V	P	N	E	Y	S	I	Y	K	E	K	E	F	T	F	N	G	I	R	Q	L	N	R	N	G	L	L	W	D	.	.	.	N	S	L	N	V	D	G	I	K	T	G	H	T	D	K	A	G	Y	N	L	V	A	S	A	T	E	G	Q
Query Conservation																																																			.	.	.
Alig confidence																																																			.	.	.
Template Conservation
Template Sequence		E	R	T	V	T	T	A	R	D	Y	A	I	L	D	L	H	V	I	K	E	T	P	K	I	L	D	F	T	K	Q	L	A	P	T	T	H	A	V	T	Y	Y	T	F	N	F	S	L	E	G	A	K	M	S	L	P	G	T	D	G	L	K	T	G	S	S	D	T	A	N	Y	N	H	T	I	T	T	K	R	G	K
Template Known Secondary structure					B	B																	T	T						T		S	S				T	T								T	T	S	T	T	S	T	T			T	T										T	T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.							.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.				.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure													.	.	.	.	.	.																																	.	.	.
Query SS confidence													.	.	.	.	.	.																																	.	.	.
Query Sequence		M	R	L	I	S	A	V	M	G	G	R	.	.	.	.	.	.	T	F	K	G	R	E	A	E	S	K	K	L	L	T	W	G	F	R	F	F	E	T	V	N	P	L	K	V	G	K	E	F	.	.	.	A	S	E	P	V	W	F	G	D	S	D	R	A	S	L	G	V	D	K	D	V	Y	L	T	I	P	R	G
Query Conservation													.	.	.	.	.	.																																	.	.	.
Alig confidence													.	.	.	.	.	.																																	.	.	.
Template Conservation
Template Sequence		F	R	I	N	Q	V	I	M	G	A	G	D	Y	K	N	L	G	G	E	K	Q	R	N	M	M	G	N	A	L	M	E	R	S	F	D	Q	Y	K	Y	V	K	I	L	S	K	G	E	Q	R	I	N	G	K	K	Y	Y	V	E	N	D	L	Y	D	V	L	P	S	D	F	S	K	K	D	Y	K	L	V	V	E	D
Template Known Secondary structure												S	B	T	T	T	T	B																												S						T	T							S								T	T			G	G	G							T
Template Predicted Secondary structure
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.		.	.	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		R	M	K	D	L	K	A	S	Y	V	L	N	S	S	E	L	H	A	P	.	L	Q	K	N	Q
Query Conservation																					.
Alig confidence																					.
Template Conservation
Template Sequence		G	K	V	H	A	D	Y	P	R	E	F	I	N	K	D	Y	G	P	P	T	V	E	V	H	Q
Template Known Secondary structure		T							S			B	S	S	T	T			S
Template Predicted Secondary structure
Template SS confidence
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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