Job Description P0AEP7 Confidence 79.44% Date Thu Jan 5 11:23:52 GMT 2012 Rank 146 Aligned Residues 73 % Identity 12% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	E	K	A	V	E	M	L	I	Q	A	E	R	P	V	I	V	A	G	G	G	V	I	N	A	D	A	A	A	L	L	Q	Q	F	A	E	L	T	S	V	P	V	I	P	T	L	M	G	W	G	C	I	P	D	D	H	E	L	M	A	G	M	V	G	L	Q	T	A	H	R	Y	G	N	A	T	L	L	A	S
Query Conservation
Alig confidence																																																		.	.	.	.	.	.								.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.								.	.	.	.	.	.
Template Sequence		T	A	G	K	L	A	Y	F	Y	K	K	R	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	A	Y	D	Q	L	L	Q	L	G	N	Q	I	G	V	Q	V	Y	G	E	P	N	.	.	.	.	.	.	N	Q	N	P	I	E	I	.	.	.	.	.	.	A	K	K	G	V	D	I	F	V	K	N	K	M
Template Known Secondary structure		T										T	T	S					B						S	S	S		S											T	T							S	S	.	.	.	.	.	.				T	T			.	.	.	.	.	.											T	T
Template Predicted Secondary structure																																																		.	.	.	.	.	.								.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.							160	.	.	.	.	.	.							.	.	.	170	.	.	.	.	.	.	.	.	.
		272	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	M	V	F	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	I	I	V
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions