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Job DescriptionP28629
Confidence99.66%DateWed Jan 25 15:20:47 GMT 2012
Rank161Aligned Residues311
% Identity15%Templated2byla1
SCOP infoPLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like
Resolution2.15

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   196...200.........210.........220.........230.........240. ........250.........260.....
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Query Sequence  SLGSLLDHTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQAC. . . . . . . . . . MTDNDVVVVDRNCHKSIEQGLMLT
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Template Conservation               

   
    
        


 
   

  
                

      

         
Template Sequence  TLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSS
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   109110.........120.........130.........140.........150.........160.........170.........180........
 
   266...270.... .....280.........290.........300.........310.........320. ........ 330........
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Query Sequence  GAKPVYMVP. SRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC. . TYDGVCYN. . . . AKEAQDLLE
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Template Sequence  TDPTSYDGFGPFMPGFDI. . . . IPYNDLPALERALQDPN. . . . . . . . . . VAAFMVEPIQGEAGVVVPDPGYLMGVRELCT
Template Known Secondary structure 

TTS
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TSTT..........
SSBTTTTSB


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   189190.........200...... ...210.........220... ......230.........240.........250....
 
   339340.........350.........360.........370.........380.........390.........400.........410........
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Query Sequence  KTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMMH
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Template Sequence  RHQVLFIADEIQTGLARTGRWL. AVDYENVRPD. . . . . . . IVLLGKALSGGLYPVSAVLCD. . . . . . DDIMLTIKPGEHF
Template Known Secondary structure  T

TTTTTTTTSSSS.GGGGGT


S.......
GGGGTTSS


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   255....260.........270...... ...280...... ...290.........300....... ..310.........320
 
   419420.........430.........440.........450.........460.........470.........480.........490........
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Query Sequence  ATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADA
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Template Sequence  STYGGNPLGCRVAIAALEVLE. . . EENLAENADKLGIILRNELMK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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SSTT
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   321........330.........340. ........350.........360..
 
   499500.........510.........520.........530.........540.........550 .........560.........570.....
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Query Sequence  PTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELE. . . ETGVPAALVTAWLGRHGIVPTRTTD
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Template Conservation  .................................        
   
    
         
  
   
   

   
   
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHG
Template Known Secondary structure  .................................S
TTTTT


SS

TT
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   363......370.........380.........390.........400.........
 
   576...580.........590.........600.....
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Query Sequence  FQIMFLFSMGVTRGKWGTLVNTLCSFKRHY
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Template Sequence  DIIRFAPPLVIKEDELRESIEIINKTILSF
Template Known Secondary structure  T


TT

T
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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