Return to main results Retrieve Phyre Job Id

Job DescriptionP28629
Confidence99.87%DateWed Jan 25 15:20:47 GMT 2012
Rank48Aligned Residues294
% Identity16%Templated2bwna1
SCOP infoPLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like
Resolution2.1

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   206...210.........220.........230.........240..... ....250.........260.........270.........280...
Predicted Secondary structure 









..
















Query SS confidence 







































. .





































Query Sequence  AFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDN. . DVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRNRYGIIG
Query Conservation   
 


 


  


  
 






 

 
 
 
    
..
 


 






  

 



 



 
  
    

Alig confidence 


























.











..





























........
Template Conservation      
   

   
        


 
.       
        
      
          
         ........
Template Sequence  YHRRLEAEIAGLHQKEAALVFSSAYNA. NDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN. . . . . . . .
Template Known Secondary structure  TT
SS
.STT
TT

S



TT........
Template Predicted Secondary structure 





.












........
Template SS confidence 















































































   92.......100.........110........ .120.........130.........140.........150.........160..
 
   284.....290.........300.........310.........320. ........330.........340.........350.........360..
Predicted Secondary structure 
















.






















Query SS confidence 





































.








































Query Sequence  PIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC. TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYAD
Query Conservation   
    
    
   
   
          







.

 

  

  
    
     









  
 
   
Alig confidence  .......














......









.








































Template Conservation  .......
       
      ......    
         
 
     
  
    
  





   
         
Template Sequence  . . . . . . . DVAHLRELIAADDPA. . . . . . APKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGV
Template Known Secondary structure  .......
S
TT......S
SB
TTT

B

T

TTTTTTSSTTS

Template Predicted Secondary structure  .......




......


























Template SS confidence 















































































   163......170....... ..180.........190.........200.........210.........220.........
 
   363......370.........380.........390.........400.........410.........420.........430.........440..
Predicted Secondary structure 






































Query SS confidence 















































































Query Sequence  HYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNS
Query Conservation   


  


       









 



 
 


      

      

   






 





 

  
  
 
Alig confidence 








.........






















..




































Template Conservation           .........              

       ..                                     
Template Sequence  AERDGLMHR. . . . . . . . . IDIFNGTLAAYGVFGGYIAASAR. . MVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAE
Template Known Secondary structure  T
GGG.........
S




S


..
TSB


TS
Template Predicted Secondary structure 






.........











..


















Template SS confidence 















































































   230........ .240.........250.........260. ........270.........280.........290........
 
   443......450.........460.........470.........480.........490.........500.........510.........520..
Predicted Secondary structure 





















































Query SS confidence 















































































Query Sequence  GLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFK
Query Conservation 
  
    
  
  

  
              
  
 
                                    


  
Alig confidence 










































.....................................
Template Conservation                    
                        .....................................
Template Sequence  GQKLRDAQQMHAKVLKMRLKALGMPIIDHGSHIVPVVIGDPVH. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  T

B


SSS



.....................................
Template Predicted Secondary structure 











.....................................
Template SS confidence 















































































   300.........310.........320.........330.........340..
 
   523......530.........540.........550.........560.........570... ......580.........590.....
Predicted Secondary structure 





























.......







Query SS confidence 


















































. . . . . . .





















Query Sequence  DIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRT. . . . . . . TDFQIMFLFSMGVTRGKWGTLV
Query Conservation          


 



   
 
  
     
  
  
  

   

  
  .......    

 
 


 
      
 
Alig confidence  ................................


















.......





















Template Conservation  ................................        
   

 
              

 
     
 



 

Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLV
Template Known Secondary structure  ................................



TTTS
TT




TTS
Template Predicted Secondary structure  ................................

















Template SS confidence 















































































   343......350.........360.........370.........380.........390
 
   596...600.
Predicted Secondary structure 
Query SS confidence 





Query Sequence  NTLCSF
Query Conservation   

  
Alig confidence 





Template Conservation   

  
Template Sequence  HAMDLL
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 





   391.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions