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Job DescriptionP28629
Confidence100.00%DateWed Jan 25 15:20:47 GMT 2012
Rank10Aligned Residues324
% Identity20%Templated2a7va1
SCOP infoPLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like
Resolution2.04

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   210.........220........ .230.........240.........250.........260.........270.........280.....
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Query Sequence  SEKYAARVFGADRSWSVVV. . . . GTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRNRYGIIGPI
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Template Sequence  CQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGYKLNPKTG. . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TT

TTT


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   103......110.........120.........130.........140.........150.....
 
   286...290.........300.........310.........320.........330.........340.........350.........360.....
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Query Sequence  YPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYA
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Template Sequence  . . . LIDYNQLALTARLFR. . . . . . . . . . PRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVI. PSPF
Template Known Secondary structure  ...SB

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TT

GGGTTSS.

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   187..190.........200. ........210.........220.........230.........240........ .250..
 
   366...370.........380.........390.........400........ .410.........420.........430.....
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Query Sequence  MRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINF. . . . . . . . . . SRFNQAYMMHATTSPLYAICASNDVAV
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Template Sequence  K. . HAD. . . . . . . IVTTTTHKTLRGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVAL
Template Known Secondary structure  G..T
S.......SSGGG
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   253 ... ...260.........270.........280.........290.........300.........310.........320...
 
   436...440.........450.........460.........470.........480.........490.........500.........510.....
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Query Sequence  SMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPG
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Template Sequence  KQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  STT
GGGS
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   324.....330.........340.........350.........360.
 
   516...520.........530.........540.........550.........560.........570....... ..580..
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Query Sequence  ESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTTDFQ. . . . . . . . . . . . . IMFLF
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Template Sequence  . . . . . . . . . . . . . . . . DNHLVLVDLRPKGLDG. . . . . . . . . ARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALT
Template Known Secondary structure  ................SSS
TTTT

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TT


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   362.......370....... ..380.........390.........400.........410......
 
   583......590.........600.........610.........620.........630.........640.........650.........660..
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Query Sequence  SMGVTRGKWGTLVNTLCSFKRHYDANTPLAQVMPELVEQYPDTYANMGIHDLGDTMFAWLKENNPGARLNEAYSGLPVAE
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Template Sequence  SRQFREDDFRRVVDFIDEGVNIG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LEVKSKT
Template Known Secondary structure  TT

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   417..420.........430......... 440......
 
   663......670.........680.........690........ .700.
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Query Sequence  VTPREAYNAIVDNNVELVSIENLPGRIAANSVIPYP. PGI
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Template Sequence  AKLQDFKSFLLKDSETSQRLANLRQRVE. QFARAFPMPGF
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   447..450.........460.........470.... .....480.....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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