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Job DescriptionP28629
Confidence99.57%DateWed Jan 25 15:20:47 GMT 2012
Rank195Aligned Residues299
% Identity17%Templated1vefa1
SCOP infoPLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like
Resolution1.35

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  HTGAFGESEKYAARVFGAD. . RSWSVVVGTSGSNRTIMQACM. . TDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRNR
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Template Sequence  PTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTW. . . . . . EPKYRE
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   85....90.........100.........110.........120.........130.........140.........150.. ......
 
   279280.........290.........300.........310.........320.... ..... 330.........340.........350..
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Query Sequence  YGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYD. . GVCYN. . . . AKEAQDLLEKTSDRLHFDEAWYG
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Template Sequence  PFLPLVEPVEFIPYNDVEALKRAVD. . . . . . . . EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTG
Template Known Secondary structure  GG
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   159160.........170.........180... ......190.........200.........210.........220.........230
 
   353......360.........370.........380.........390.........400.........410.........420.........430..
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Query Sequence  YARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASND
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Template Sequence  MGRTGKRF. AFEHFGIVPD. . . . . . . ILTLA. . KALGGGVPLGVAV. . . . . . . MREEVARSMPKGGHGTTFGGNPLAMAA
Template Known Secondary structure  TTTTSSSS.TT


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   231....... .240........ .250... ......260...... ...270.........280.........290...
 
   433......440.........450.........460.........470.........480.........490.........500.........510..
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Query Sequence  VAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVM
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Template Sequence  GVAAIRYLE. RTRLWERAAELGPWFMEKLRAIP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  .TTTS
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   294.....300.. .......310.........320.....
 
   513......520.........530.........540.........550.........560.........570.........580.........590..
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Query Sequence  HPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTTDFQIMFLFSMGVTRGKWG
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Template Sequence  . . . . . . . . . . . . . . . . . . . SPK. . IREVRGMGLMVGLELKEKAAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLE
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   326.. .330.........340.........350.........360.........370.........380....
 
   593......600.
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Query Sequence  TLVNTLCSF
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Template Sequence  RVVEAVRAV
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   385....390...
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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