Job Description P28629 Confidence 99.62% Date Wed Jan 25 15:20:47 GMT 2012 Rank 178 Aligned Residues 299 % Identity 14% Template d1pffa_ SCOP info PLP-dependent transferase-like PLP-dependent transferases Cystathionine synthase-like Resolution 2.50

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		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.
Query SS confidence																																																							.
Query Sequence		E	K	Y	A	A	R	V	F	G	A	D	R	S	W	S	V	V	V	G	T	S	G	S	N	R	T	I	M	Q	A	C	M	T	D	N	D	V	V	V	V	D	R	N	C	H	K	S	I	E	Q	G	L	M	.	L	T	G	A	K	P	V	Y	M	V	P	S	R	N	R	Y	G	I	I	G	P	I	Y	P	Q	E
Query Conservation																																																							.
Alig confidence															.																																								.												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.																																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	G	K	I	A	K	L	E	H	A	E	A	C	.	A	A	T	A	S	G	M	G	A	I	A	A	S	V	W	T	F	L	K	A	G	D	H	L	I	S	D	D	C	L	Y	G	C	T	H	A	L	F	E	H	Q	L	R	K	F	G	V	E	V	D	F	.	.	.	.	.	.	.	.	.	.	.	.	I	D	M
Template Known Secondary structure										T		S			.				S	S															T	T							S												T					T	T						.	.	.	.	.	.	.	.	.	.	.	.			T
Template Predicted Secondary structure															.																																																				.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80		.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.													.	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	Q	P	E	T	L	Q	K	K	I	S	E	S	P	L	T	K	D	K	A	G	Q	K	P	S	Y	C	V	V	T	N	C	T	Y	D	G	V	C	Y	N	A	K	E	A	Q	D	L	L	E	K	T	S	D	R	L	H	F	D	E	A	W	Y	G	Y	A	R	F	N	P	I	Y	A	D	H	Y	A	M	R	G	E
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.
Template Sequence		A	V	P	G	N	I	E	K	H	L	K	P	N	T	.	.	.	.	.	.	.	.	R	I	V	Y	F	E	T	P	A	N	P	T	L	K	V	I	D	I	E	D	A	V	K	Q	A	R	K	Q	K	D	I	L	V	I	V	D	N	T	F	A	S	P	I	L	T	N	P	L	D	L	G	.	.	.	.	.	.	.
Template Known Secondary structure		T	S	T	T					T			T	T		.	.	.	.	.	.	.	.							S	S		T	T	T														T	T	S	S	S								T	T	T							G	G	G	G	T	.	.	.	.	.	.	.
Template Predicted Secondary structure																.	.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.									.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	D	H	N	G	P	T	V	F	A	T	H	S	T	H	K	L	L	N	A	L	S	Q	A	S	Y	I	H	V	R	E	G	R	G	A	I	N	F	S	R	F	N	Q	A	Y	M	M	H	A	T	T	S	P	L	Y	A	I	C	A	S	N	D	V	A	V	S	M	M	D	G	N	S	G	L	S	L	T	Q	E
Query Conservation
Alig confidence				.	.	.	.	.	.	.																										.																																						.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.																										.																																						.	.	.	.	.
Template Sequence		V	D	.	.	.	.	.	.	.	I	V	V	H	S	A	T	K	Y	I	N	G	H	T	D	V	V	A	G	L	V	C	S	R	A	.	D	I	I	A	K	V	K	S	Q	G	I	K	D	I	T	G	A	I	I	S	P	H	D	A	W	L	I	T	R	G	T	L	T	L	D	M	R	.	.	.	.	.	V	K	R
Template Known Secondary structure			S	.	.	.	.	.	.	.						T	T	T	T	T	S	S	S	S	S											.									T																													.	.	.	.	.
Template Predicted Secondary structure				.	.	.	.	.	.	.																										.																																						.	.	.	.	.
Template SS confidence
		200	.								.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.						.	.	.
		450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	D	E	A	V	D	F	R	Q	A	M	A	R	L	Y	K	E	F	T	A	D	G	S	W	F	F	K	P	W	N	K	E	V	V	T	D	P	Q	T	G	K	T	Y	D	F	A	D	A	P	T	K	L	L	T	T	V	Q	D	C	W	V	M	H	P	G	E	S	W	H	G	F	K	D	I	P	D	N	W	S
Query Conservation
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	E	N	A	Q	K	V	A	E	F	L	H	E	H	K	A	V	K	K	V	Y	Y	P	G	L	P	D	H	P	G	H	E	I	A	K	K	Q	M	K	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																	T	T							T	T	S	T	T	S	T	T									S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.																												.	.	.	.	.	580	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	L	D	P	I	K	V	S	I	L	A	P	G	M	G	E	D	G	E	L	E	E	T	G	V	P	A	A	L	V	T	A	W	L	G	R	H	G	I	V	P	T	R	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	F	Q	I	M	F	L	F
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.														.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.														.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	F	G	S	M	I	A	F	D	V	D	G	L	E	.	.	.	.	.	.	.	.	.	.	K	A	K	K	V	L	D	N	C	H	V	V	S	L	A	V	S	L	G	G	P	E	S	L	I	Q	H	P	A	S	M	T	H	A	G	V	P	K	E	E	R	E	A	A	G	L	T	D	N	L	I	R	L	S	V
Template Known Secondary structure		.	.			S							S	S			.	.	.	.	.	.	.	.	.	.								T		S	S	S				S	S			S	S	S										T	S	T	T	S								T	T			T	T
Template Predicted Secondary structure		.	.														.	.	.	.	.	.	.	.	.	.
Template SS confidence
				308	.	310	.	.	.	.	.	.	.	.	.	320											.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	M	G	V	T	R	G	K	W	G	T	L	V	N	T	L	C	S	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	C	E	N	V	Q	D	I	I	D	D	L	K	Q	A	L	D	L	V
Template Known Secondary structure			S	S															T
Template Predicted Secondary structure
Template SS confidence
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions