Job Description P28629 Confidence 99.70% Date Wed Jan 25 15:20:47 GMT 2012 Rank 143 Aligned Residues 319 % Identity 14% Template d1m7ya_ SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like Resolution 1.60

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		208	.	210	.	.	.	.	.	.	.	.	.	220	.						.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.		.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																.	.	.	.	.																																													.
Query SS confidence																.	.	.	.	.																																													.
Query Sequence		G	E	S	E	K	Y	A	A	R	V	F	G	A	D	.	.	.	.	.	R	S	W	S	V	V	V	G	T	S	G	S	N	R	T	I	M	Q	A	C	M	T	D	N	D	V	V	V	V	D	R	N	C	H	K	S	I	E	Q	G	L	M	L	T	.	G	A	K	P	V	Y	M	V	P	S	R	N	R	Y	G	I
Query Conservation																.	.	.	.	.																																													.
Alig confidence																.	.	.	.	.																																													.
Template Conservation
Template Sequence		K	A	M	V	D	F	M	A	E	I	R	G	N	K	V	T	F	D	P	N	H	L	V	L	T	A	G	A	T	S	A	N	E	T	F	I	F	C	L	A	D	P	G	E	A	V	L	I	P	T	P	Y	Y	P	G	F	D	R	D	L	K	W	R	T	G	V	E	I	V	P	I	H	C	T	S	S	N	G	F	Q
Template Known Secondary structure												T	T	T	S	S				G	G	G																					T	T								S			T	T					T	T	T	T	T											G	G	G	T	S
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.		.	.	.	.				.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure																																												.					.	.	.
Query SS confidence																																												.					.	.	.
Query Sequence		I	G	P	I	Y	P	Q	E	M	Q	P	E	T	L	Q	K	K	I	S	E	S	P	L	T	K	D	K	A	G	Q	K	P	S	Y	C	V	V	T	N	C	T	Y	.	D	G	V	C	.	.	.	Y	N	A	K	E	A	Q	D	L	L	E	K	T	S	D	R	L	H	F	D	E	A	W	Y	G	Y	A	R	F	N
Query Conservation																																												.					.	.	.
Alig confidence			.	.	.	.	.	.	.	.														.	.	.	.																	.					.	.	.
Template Conservation			.	.	.	.	.	.	.	.														.	.	.	.
Template Sequence		I	.	.	.	.	.	.	.	.	T	E	T	A	L	E	E	A	Y	Q	E	A	E	.	.	.	.	K	R	N	L	R	V	K	G	V	L	V	T	N	P	S	N	P	L	G	T	T	M	T	R	N	E	L	Y	L	L	L	S	F	V	E	D	K	G	I	H	L	I	S	D	E	I	Y	S	G	T	A	F	S	S
Template Known Secondary structure			.	.	.	.	.	.	.	.														.	.	.	.		T	T										S	S		T	T	T																				T								T	T	G	G	G			S	S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.														.	.	.	.
Template SS confidence
		173									.	.	.	.	.	.	180	.	.	.	.	.	.					.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.					.	.	380	.	.	.	.	.	.	.	.	.		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure																						.	.	.	.													.
Query SS confidence																						.	.	.	.													.
Query Sequence		P	I	Y	A	D	H	Y	A	M	R	G	E	P	G	D	H	N	G	P	T	.	.	.	.	V	F	A	T	H	S	T	H	K	L	L	N	.	A	L	S	Q	A	S	Y	I	H	V	R	E	G	R	G	A	I	N	F	S	R	F	N	Q	A	Y	M	M	H	A	T	T	S	P	L	Y	A	I	C	A	S	N	D
Query Conservation																						.	.	.	.													.
Alig confidence																						.	.	.	.													.														.	.	.
Template Conservation																																																				.	.	.
Template Sequence		P	S	F	I	S	V	M	E	V	L	K	D	R	N	C	D	E	N	S	E	V	W	Q	R	V	H	V	V	Y	S	L	S	K	D	L	G	L	P	G	F	R	V	G	A	I	Y	S	N	D	D	.	.	.	M	V	V	A	A	A	T	K	M	S	S	F	G	L	V	S	S	Q	T	Q	H	L	L	S	A	M	L
Template Known Secondary structure		S									T	T	T	T	T		S	S	S	S	S	G	G	G	G							S	S	S	S	S			G	G	G								S			.	.	.										G	G	G	S
Template Predicted Secondary structure																																																				.	.	.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290				.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	V	S	M	M	D	G	N	S	G	L	S	L	T	Q	E	V	I	D	E	A	V	D	F	R	Q	A	M	A	R	L	Y	K	E	F	T	A	D	G	S	W	F	F	K	P	W	N	K	E	V	V	T	D	P	Q	T	G	K	T	Y	D	F	A	D	A	P	T	K	L	L	T	T	V	Q	D	C	W	V	M
Query Conservation
Alig confidence											.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	D	K	K	L	T	K	N	Y	.	I	A	E	N	H	K	R	L	K	Q	R	Q	K	K	L	V	S	G	L	Q	K	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											.																					T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.		.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
		513	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.							.	.	.	.	.	.	.	.	580	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.
Query Sequence		H	P	G	E	S	W	H	G	F	K	D	I	P	D	N	W	S	M	L	D	P	I	K	V	S	I	L	A	P	G	M	G	E	D	G	E	L	E	E	T	G	V	P	A	A	L	V	T	A	W	L	G	R	H	G	I	V	P	T	.	.	.	.	.	.	R	T	T	D	F	Q	I	M	F	L	F	S	M	G	V
Query Conservation																																																													.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.													.	.	.	.																	.	.	.																		.	.	.	.	.	.													.
Template Conservation		.	.	.	.	.	.	.													.	.	.	.																	.	.	.																																				.
Template Sequence		.	.	.	.	.	.	.	G	I	S	C	L	N	G	N	A	G	L	F	.	.	.	.	C	W	V	D	M	R	H	L	L	R	S	N	T	F	E	A	.	.	.	E	M	E	L	W	K	K	I	V	Y	E	V	H	L	N	I	S	P	G	S	S	C	H	C	T	E	P	G	W	F	R	V	C	F	A	.	N	L
Template Known Secondary structure		.	.	.	.	.	.	.	T								S	S	S		.	.	.	.						G	G	G	S	S	S	S	S				.	.	.											T	S							G	G	G	G	T		S	S	T	T							S	.	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.													.	.	.	.																	.	.	.																																				.
Template SS confidence
									349	350	.	.	.	.	.	.	.	.	.	360					.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.				.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.		.	.
		587	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	G	K	W	G	T	L	V	N	T	L	C	S	F	K	R	H	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	E	R	T	L	D	L	A	M	Q	R	L	K	A	F	V	G	E	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions