Return to main results Retrieve Phyre Job Id

Job DescriptionP28629
Confidence99.91%DateWed Jan 25 15:20:47 GMT 2012
Rank28Aligned Residues360
% Identity17%Templated1js3a_
SCOP infoPLP-dependent transferase-like PLP-dependent transferases Pyridoxal-dependent decarboxylase
Resolution2.25

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   142.......150.........160 .........170.........180.........190.........200.........210........
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Query Sequence  LFSALMKYSDIHEYSWAAP. . . GHQGGVGFTKTPAGRFYHDYYGENLFRTDMGIERTSLGSLLDHTGAFGESEKYAARVF
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Template Sequence  ILQDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAAS. . . . . . . . . PACTELETVMMDWLGKML
Template Known Secondary structure  TTGGG


TTSTTB
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SSGGG
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   56...60.........70.........80.........90.........100........ .110.........120......
 
   219220..... ....230.........240. ........250.........260.........
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Query Sequence  GADRSWS. . . . . . . . . . VVVGTSGSNRTIMQAC. . . . . . . . . . . . . . . . . . . MTDNDVVVVDRNCHKSIEQGLMLTGAKP
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Template Sequence  QLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKL
Template Known Secondary structure  T

GGG

TTT
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STT

TT

T
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   127..130.........140.........150.........160.........170.........180.........190.........200......
 
   270.........280.........290.........300.........310.........320.... .....330.........340........
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Query Sequence  VYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYD. GVCYNAKEAQDLLEKTSDRLHFDE
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Template Sequence  KAIPS. . DGKFAM. . . . . . . . RASALQEALERDK. . . . AAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDA
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BS
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TT

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   207..210. ...... ..220.........230 .........240.........250.........260.........270..
 
   349350.........360.........370.........380.........390.........400.........410..... ...
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Query Sequence  AWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAY. . . . . . . . . . MMH
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Template Sequence  AYAGSAFICPEFRHLLNGVEFAD. . . . . . . SFNFNPHKWLLVNFDCSAMWV. . . . . . KRRTDLTGAFKSGLITDYRHWQL
Template Known Secondary structure  TTGGGGGGSTTTGGGGTTGGG
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   273......280.........290..... ....300.........310...... ...320.........330.........
 
   419420.........430.........440.........450.........460.........470.........480.........490........
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Query Sequence  ATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADA
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Template Sequence  PLGRRFRSL. . KMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEV. . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 
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   352.......360 .........370.........380.........390.........400....
 
   499500.........510.........520.........530.........540.........550.........560.........570........
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Query Sequence  PTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTTDFQI
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TLGLVCFRLKGSDGLNEA. . . . . . . . LLERINSARKIHLVPCRLRGQ
Template Known Secondary structure  .................................
SSSS
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TT
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   405....410.........420.. .......430.........440...
 
   579580. . .......590.........600.....
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Query Sequence  MFL. . . F. SMGVTRGKWGTLVNTLCSFKRHY
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Template Sequence  FVLRFAICSRKVESGHVRLAWEHIRGLAAEL
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TT

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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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