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Job DescriptionP28629
Confidence99.77%DateWed Jan 25 15:20:47 GMT 2012
Rank95Aligned Residues386
% Identity13%Templated1iaya_
SCOP infoPLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like
Resolution2.70

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   135....140.........150.........160.........170.........180.........190.........200.........210....
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Query Sequence  RQQLLPPLFSALMKYSDIHEYSWAAPGHQGGVGFTKTPAGRFYHDYYGENLFRTDMGIERTSLGSLLDHTGAFGESEKYA
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Template Conservation       
 
                   
 
 
                                 
    
   

 


Template Sequence  LATNESPYFDGWKAYDSDPFHPLKNPNGVIQMGLAENQLCLDLIEDWIKRNPKGSICSSFKAIANFQDYHGLPEFRKAIA
Template Known Secondary structure  TGGG


TTSB

SSSSTTSB
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SS
TTSSTT




TT

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   15....20.........30.........40.........50.........60.........70.........80.........90....
 
   215 ....220.... .....230.........240.........250.........260...... ...270.........280.....
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Query Sequence  A. . . RVFGADRSW. . . . . SVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTG. AKPVYMVPSRNRYGIIGPI
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Template Sequence  KFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKI. . .
Template Known Secondary structure  TTT
S


TTS


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TTTTTTT




TTTTT

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   104.....110.........120.........130.........140.........150.........160.........170.........180
 
   286...290.........300.........310.........320....... ..330.........340.........350.........360.
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Query Sequence  YPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVC. . . . YNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYA
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Template Sequence  . . . . . TSKAVKEAYENAQ. . . . KSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEI. YAATVFDTPQ.
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....TT

SS
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TTT

T.TGGG

SSS
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   181........190... ......200.........210.........220.........230......... 240.........
 
   362.......370... ......380.........390. ........400.........410.........420.........430......
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Query Sequence  DHYAMRGEPGDH. . . . NGPTVFATHSTHKLLNAL. SQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVS
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Template Sequence  FVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFND. . . DVVNCARKMSSFGLVSTQTQYFLAAMLSDEK
Template Known Secondary structure 


TSGGGTTS
TTSSTTTSS
GGG
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...TTS


TT
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   250.........260.........270.........280.........290..... ....300.........310.........320......
 
   437..440.........450.........460.........470.........480.........490.........500.........510......
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Query Sequence  MMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGE
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Template Conservation       .              
   
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Template Sequence  FVDNF. LRESAMRLGKRHKHFTNGLEVV. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  .T....................................................
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   327..330. ........340.........350...
 
   517..520.........530.........540.........550.........560.........570. ........580.........590
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Query Sequence  SWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPT. . . . . . RTTDFQIMFLFSMGVTRGK
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Template Sequence  . . . GIKCLKNNAGLF. . . . CWMDLRPLLRESTFDS. . . EMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA. NMDDGT
Template Known Secondary structure  ...T

B


SSSS....
GGG
SSSS...TS

GGGGT
SSSS
S.SS
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   354.....360..... ....370.........380. ........390.........400.........410...... ...420..
 
   591........600.
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Query Sequence  WGTLVNTLCSF
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Template Conservation 
   
 

   
Template Sequence  VDIALARIRRF
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   423......430...
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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