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Job DescriptionP28629
Confidence99.87%DateWed Jan 25 15:20:47 GMT 2012
Rank47Aligned Residues306
% Identity14%Templatec3uwcA_
PDB info PDB header:transferaseChain: A: PDB Molecule:nucleotide-sugar aminotransferase; PDBTitle: structure of an aminotransferase (degt-dnrj-eryc1-strs family) from2 coxiella burnetii in complex with pmp
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   199200.........210.........220.........230.........240.........250.........260.........270........
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Query Sequence  SLLDHTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRNR
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Template Conservation       
     

  

   
    
   


 

  

       

 

                             
Template Sequence  ADFTLGAELEKFEKRFAALHNAPHAIGVGTGTDALAXSFKXLNIGAGDEVITCANTFIASVGAIVQAGATPVLVDSENGY
Template Known Secondary structure  T

SS
TT
SS
TT

TT
SSS
TT

B
TTS
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   2930.........40.........50.........60.........70.........80.........90.........100........
 
   279280.........290.........300.........310.........320.........330.........340.........350........
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Query Sequence  YGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNP
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Template Conservation     ......................                     
       
  
       

 
 
   
     
Template Sequence  VID. . . . . . . . . . . . . . . . . . . . . . PEKIEAAITDKTKAIXPVHYTGNIADXPALAKIAKKHNLHIVEDACQTILGRIND
Template Known Secondary structure  SB
......................GGGTGGG

TT

B
GGG



TT

TT
TT
TT
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   109110. ........120.........130.........140.........150.........160......
 
   359360.........370.........380.........390.........400.........410.........420........
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Query Sequence  IYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAIC. . . . . . . . . .
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Template Conservation    ...     
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Template Sequence  KF. . . VGSWGQFA. . . . . . . CFSLHPLKNLNVWSDAGVII. . . . . . . THSDEYAEKLRLYRNHGLINRDVCVEYGINCRX
Template Known Secondary structure  ...TTSSSS.......
SSSSSS

SS

.......S
TBTTTTSS


B
B
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   167. .170...... ...180.........190...... ...200.........210.........220.........
 
   429430.........440.........450.........460.........470.........480.........490.........500........
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Query Sequence  ASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQD
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Template Conservation                              
   
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Template Sequence  DTIQAVIANRLXNQLETITEKRRGIAHLYDQSFVDLSEFIDVPVR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 
GGGTGGGTTT



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   230.........240.........250.........260.........270....
 
   509510.........520.........530.........540.........550.........560.........570......
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Query Sequence  CWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTTDF. . . . . . . . . . . .
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Template Conservation  .......................         .......           
   
   

 
                  
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . REGVYHVFH. . . . . . . IYVLRVKYRDQLFQYLKDNGIEVKIHYPIAXHLQPAAKSLG
Template Known Secondary structure  .......................
TT


S.......STTTTB

B
S
SS
GGGSGGGGGG
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   275....280... ......290.........300.........310.........320....
 
   577..580.........590.........600........
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Query Sequence  . . . . . . . . . . . . . . . QIMFLFSMGVTRGKWGTLVNTLCSFKRHYDAN
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Template Sequence  YQQGDFPXAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLEKHYN
Template Known Secondary structure 

TTS



TTS
TTTT
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   325....330.........340.........350.........360.........370.
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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