Job Description P28629 Confidence 99.72% Date Wed Jan 25 15:20:47 GMT 2012 Rank 129 Aligned Residues 294 % Identity 14% Template c3qi6B_ PDB info PDB header:lyase Chain: B: PDB Molecule:cystathionine gamma-synthase metb (cgs); PDBTitle: crystal structure of cystathionine gamma-synthase metb (cgs) from2 mycobacterium ulcerans agy99 Resolution 1.91 Å

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		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.					.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure																																																													.	.	.	.
Query SS confidence																																																													.	.	.	.
Query Sequence		F	G	E	S	E	K	Y	A	A	R	V	F	G	A	D	R	S	W	S	V	V	V	G	T	S	G	S	N	R	T	I	M	Q	A	C	M	T	D	N	D	V	V	V	V	D	R	N	C	H	K	S	I	E	Q	G	L	M	L	T	.	.	.	.	G	A	K	P	V	Y	M	V	P	S	R	N	R	Y	G	I	I
Query Conservation																																																													.	.	.	.
Alig confidence																					.																																								.	.	.	.											.	.	.	.	.	.	.
Template Conservation																					.																																																						.	.	.	.	.	.	.
Template Sequence		R	T	A	L	E	A	A	L	A	A	V	E	D	A	A	F	G	R	A	.	F	S	S	G	M	A	A	A	D	C	A	L	R	A	M	L	R	P	G	D	H	V	V	I	P	D	D	A	Y	G	G	T	F	R	L	I	D	K	V	F	T	G	W	N	V	E	Y	T	P	V	A	L	A	.	.	.	.	.	.	.
Template Known Secondary structure													T	T		S					.		S	S															T	T							T	T												T	G	G	G	G	T								T	T	.	.	.	.	.	.	.
Template Predicted Secondary structure																					.																																																						.	.	.	.	.	.	.
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.		.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		G	P	I	Y	P	Q	E	M	Q	P	E	T	L	Q	K	K	I	S	E	S	P	L	T	K	D	K	A	G	Q	K	P	S	Y	C	V	V	T	N	C	T	Y	.	D	G	V	C	Y	N	A	K	E	A	Q	D	L	L	E	K	T	S	D	R	L	H	F	D	E	A	W	Y	G	Y	A	R	F	N	P	I	Y	A
Query Conservation																																											.
Alig confidence		.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.											.																																					.	.
Template Conservation		.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.																																																.	.
Template Sequence		.	.	.	.	.	.	.	.	D	L	D	A	V	R	A	A	I	R	P	T	T	.	.	.	.	.	.	.	.	.	.	R	L	I	W	V	E	T	P	T	N	P	L	L	S	I	A	D	I	A	G	I	A	Q	L	G	A	D	S	S	A	K	V	L	V	D	N	T	F	A	S	P	A	L	Q	Q	P	L	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.											T	T		.	.	.	.	.	.	.	.	.	.							S	S		T	T	T																T	T								T	T	T		T	T	T			G	G	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.																																																.	.
Template SS confidence
										136	.	.	.	140	.	.	.	.	.	.	.	.											.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	H	Y	A	M	R	G	E	P	G	D	H	N	G	P	T	V	F	A	T	H	S	T	H	K	L	L	N	A	L	S	Q	A	S	Y	I	H	V	R	E	G	R	G	A	I	N	F	S	R	F	N	Q	A	Y	M	M	H	A	T	T	S	P	L	Y	A	I	C	A	S	N	D	V	A	V	S	M	M	D	G	N
Query Conservation
Alig confidence		.	.	.	.	.						.	.	.	.	.	.	.																									.	.	.
Template Conservation		.	.	.	.	.						.	.	.	.	.	.	.																									.	.	.
Template Sequence		.	.	.	.	.	S	L	G	A	D	.	.	.	.	.	.	.	V	V	L	H	S	T	T	Y	I	G	G	H	S	D	V	V	G	G	A	L	V	T	N	D	.	.	.	E	E	L	D	Q	S	F	A	F	L	Q	N	G	A	G	A	V	P	G	P	F	D	A	Y	L	T	M	R	G	L	K	T	L	V	L	R
Template Known Secondary structure		.	.	.	.	.	G	G	T		S	.	.	.	.	.	.	.										S		S	S										S		.	.	.																															T	T
Template Predicted Secondary structure		.	.	.	.	.						.	.	.	.	.	.	.																									.	.	.
Template SS confidence
							196	.	.	.	200								.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.				.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		442	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	L	S	L	T	Q	E	V	I	D	E	A	V	D	F	R	Q	A	M	A	R	L	Y	K	E	F	T	A	D	G	S	W	F	F	K	P	W	N	K	E	V	V	T	D	P	Q	T	G	K	T	Y	D	F	A	D	A	P	T	K	L	L	T	T	V	Q	D	C	W	V	M	H	P	G	E	S	W	H	G	F
Query Conservation
Alig confidence		.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	M	Q	R	H	S	E	N	A	A	A	V	A	E	F	L	A	E	H	P	A	I	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	L	Y	P	G	L	P	S	H	P	G
Template Known Secondary structure		.	.	.	.	.																	T		T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T	S	T	T	S	T	T
Template Predicted Secondary structure		.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
							262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.																																										.	.	.	.	.	.	290	.	.	.	.	.
		522	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.																				.	.	.	.	.	.	580	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	D	I	P	D	N	W	S	M	L	D	P	I	K	V	S	I	L	A	P	G	M	G	E	D	G	E	L	E	E	T	G	V	P	A	A	L	V	T	A	W	L	G	R	H	G	I	V	P	T	R	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	D	F	Q	I	M	F	L	F
Query Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.
Template Sequence		H	A	V	A	A	R	Q	M	R	G	F	G	G	M	V	S	V	R	M	R	A	G	R	T	A	A	.	.	.	.	.	.	.	.	.	E	Q	L	C	A	K	T	N	I	F	I	L	A	E	S	L	G	S	V	E	S	L	I	E	H	P	S	A	M	T	G	S	Q	L	E	V	P	D	D	L	V	R	L	S	V
Template Known Secondary structure										S	S			S							T	T						.	.	.	.	.	.	.	.	.								S	S	S				S					S	S						T	T	T					S					T	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.										.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	M	G	V	T	R	G	K	W	G	T	L	V	N	T	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	I	E	D	V	A	D	L	L	D	D	L	K	Q	A	L
Template Known Secondary structure			S	S
Template Predicted Secondary structure
Template SS confidence
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions