Job Description P28629 Confidence 100.00% Date Wed Jan 25 15:20:47 GMT 2012 Rank 2 Aligned Residues 692 % Identity 36% Template c3n75E_ PDB info PDB header:lyase Chain: E: PDB Molecule:lysine decarboxylase, inducible; PDBTitle: x-ray crystal structure of the escherichia coli inducible lysine2 decarboxylase ldci Resolution 2.00 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	V	G	N	A	V	E	R	L	A	D	A	L	S	Q	Q	N	V	T	V	I	K	S	T	S	F	D	D	G	F	A	I	L	S	S	N	E	A	I	D	C	L	M	F	S	Y	Q	M	E	H	P	D	E	H	Q	N	V	R	Q	L	I	G	K	L	H	E	R	Q	Q	N	V	P	V	F	L	L	G	D	R	E
Query Conservation
Alig confidence																																																				.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.
Template Sequence		F	K	E	E	P	I	R	E	L	H	R	A	L	E	R	L	N	F	Q	I	V	Y	P	N	D	R	D	D	L	L	K	L	I	E	N	N	A	R	L	C	G	V	I	F	D	W	D	K	Y	N	.	.	.	.	.	.	.	L	E	L	C	E	E	I	S	K	M	N	E	N	L	P	L	Y	A	F	A	N	T	Y
Template Known Secondary structure																	T	T							S	S												T	T													.	.	.	.	.	.	.												T	T									T	T
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.								.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	L	A	A	M	D	R	D	L	L	E	L	V	D	E	F	A	W	I	L	E	D	T	A	D	F	I	A	G	R	A	V	A	A	M	T	R	Y	R	Q	Q	L	L	P	P	L	F	S	A	L	M	K	Y	S	D	I	H	E	Y	S	W	A	A	P	G	H	Q	G	G	V	G	F	T	K	T	P	A	G	R
Query Conservation
Alig confidence				.
Template Conservation				.
Template Sequence		S	T	.	L	D	V	S	L	N	D	L	R	L	Q	I	S	F	F	E	Y	A	L	G	A	A	E	D	I	A	N	K	I	K	Q	T	T	D	E	Y	I	N	T	I	L	P	P	L	T	K	A	L	F	K	Y	V	R	E	G	K	Y	T	F	C	T	P	G	H	M	G	G	T	A	F	Q	K	S	P	V	G	S
Template Known Secondary structure				.			G	G	G	T	T	S											T	T																					S																		S		S	S	T	T	T	T	T					T	S
Template Predicted Secondary structure				.
Template SS confidence
		87	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	Y	H	D	Y	Y	G	E	N	L	F	R	T	D	M	G	I	E	R	T	S	L	G	S	L	L	D	H	T	G	A	F	G	E	S	E	K	Y	A	A	R	V	F	G	A	D	R	S	W	S	V	V	V	G	T	S	G	S	N	R	T	I	M	Q	A	C	M	T	D	N	D	V	V	V	V	D	R	N	C	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	F	Y	D	F	F	G	P	N	T	M	K	S	D	I	S	I	S	V	S	E	L	G	S	L	L	D	H	S	G	P	H	K	E	A	E	Q	Y	I	A	R	V	F	N	A	D	R	S	Y	M	V	T	N	G	T	S	T	A	N	K	I	V	G	M	Y	S	A	P	A	G	S	T	I	L	I	D	R	N	C	H
Template Known Secondary structure														T				T	T	S	G	G	G		B	T	T	T	T	B	T														T		S						S	S																T	T							S	S
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.				.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																																																														.	.	.
Query SS confidence																																																														.	.	.
Query Sequence		K	S	I	E	Q	G	L	M	L	T	G	A	K	P	V	Y	M	V	P	S	R	N	R	Y	G	I	I	G	P	I	Y	P	Q	E	M	Q	P	E	T	L	Q	K	K	I	S	E	S	P	L	T	K	D	K	A	G	Q	K	P	S	Y	.	.	.	C	V	V	T	N	C	T	Y	D	G	V	C	Y	N	A	K	E
Query Conservation																																																														.	.	.
Alig confidence																																																		.	.	.	.	.	.	.	.					.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.
Template Sequence		K	S	L	T	H	L	M	M	M	S	D	V	T	P	I	Y	F	R	P	T	R	N	A	Y	G	I	L	G	G	I	P	Q	S	E	F	Q	H	A	T	I	A	K	R	V	K	E	T	P	.	.	.	.	.	.	.	.	N	A	T	W	P	V	H	A	V	I	T	N	S	T	Y	D	G	L	L	Y	N	T	D	F
Template Known Secondary structure											S													T	T								G	G	G	G	S											S	T	.	.	.	.	.	.	.	.	T			S		S						S	S		T	T
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.									.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	D	L	L	E	K	T	S	D	R	L	H	F	D	E	A	W	Y	G	Y	A	R	F	N	P	I	Y	A	D	H	Y	A	M	R	G	E	P	G	D	H	N	G	P	T	V	F	A	T	H	S	T	H	K	L	L	N	A	L	S	Q	A	S	Y	I	H	V	R	E	G	R	G	A	I	N	F	S	R	F	N
Query Conservation
Alig confidence											.	.																													.	.														.																.	.	.
Template Conservation											.	.																													.	.														.																.	.	.
Template Sequence		I	K	K	T	L	D	V	K	S	.	.	I	H	F	D	S	A	W	V	P	Y	T	N	F	S	P	I	Y	E	G	K	C	G	M	S	G	G	R	V	.	.	E	G	K	V	I	Y	E	T	Q	S	T	H	L	.	L	A	A	F	S	Q	A	S	M	I	H	V	K	G	D	.	.	.	V	N	E	E	T	F	N
Template Known Secondary structure									S		.	.						T	T		T	T	G	G	G	S	G	G	G	T	T	S	S	T	T	S	S				.	.	T	T												.		S			T	T								S		.	.	.
Template Predicted Secondary structure											.	.																													.	.														.																.	.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.			.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.			.	.	.	.	.	360	.	.	.	.	.	.	.		.	.	370	.	.	.	.	.	.	.	.	.	380	.	.				.	.	.	.	.	.	.
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	Y	M	M	H	A	T	T	S	P	L	Y	A	I	C	A	S	N	D	V	A	V	S	M	M	D	G	N	S	G	L	S	L	T	Q	E	V	I	D	E	A	V	D	F	R	Q	A	M	A	R	L	Y	K	E	F	T	A	D	G	S	W	F	F	K	P	W	N	K	E	V	V	T	D	P	Q	T	G	K	T
Query Conservation
Alig confidence																																																									.	.	.															.	.	.	.	.	.	.	.
Template Conservation																																																									.	.	.															.	.	.	.	.	.	.	.
Template Sequence		E	A	Y	M	M	H	T	T	T	S	P	H	Y	G	I	V	A	S	T	E	T	A	A	A	M	M	K	G	N	A	G	K	R	L	I	N	G	S	I	E	R	A	I	K	F	R	K	E	I	K	R	L	R	T	E	.	.	.	S	D	G	W	F	F	D	V	W	Q	P	D	H	I	.	.	.	.	.	.	.	.
Template Known Secondary structure								S		S	S																	S																													.	.	.	S	S	S						S	S		S			.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																									.	.	.															.	.	.	.	.	.	.	.
Template SS confidence
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.				.	.	.	.	450	.	.	.	.	.	.	.	.	.
		493	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	F	A	D	A	P	T	K	L	L	T	T	V	Q	D	C	W	V	M	H	P	G	E	S	W	H	G	F	K	D	I	P	D	N	W	S	M	L	D	P	I	K	V	S	I	L	A	P	G	M	G	E	D	G	E	L	E	E	T	G	V	P	A	A	L	V	T	A	W	L	G	R	H	G	I	V	P	T	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	D	T	T	E	C	W	P	L	R	S	D	S	T	W	H	G	F	K	N	I	D	N	E	H	M	Y	L	D	P	I	K	V	T	L	L	T	P	G	M	E	K	D	G	T	M	S	D	F	G	I	P	A	S	I	V	A	K	Y	L	D	E	H	G	I	V	V	E	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.		S		S						T	T			T	T			T	T			S	S	S					T	T							S	S	B		S	S	S		B		S	S														T	T				S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
														460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.
		573	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	D	F	Q	I	M	F	L	F	S	M	G	V	T	R	G	K	W	G	T	L	V	N	T	L	C	S	F	K	R	H	Y	D	A	N	T	P	L	A	Q	V	M	P	E	L	V	E	Q	Y	P	D	T	Y	A	N	M	G	I	H	D	L	G	D	T	M	F	A	W	L	K	E	N	N	P	G	A	R	L	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	G	P	Y	N	L	L	F	L	F	S	I	G	I	D	K	T	K	A	L	S	L	L	R	A	L	T	D	F	K	R	A	F	D	L	N	L	R	V	K	N	M	L	P	S	L	Y	R	E	D	P	E	F	Y	E	N	M	R	I	Q	E	L	A	Q	N	I	H	K	L	I	V	H	H	N	L	P	D	L	M	Y
Template Known Secondary structure				S	S								T	T																						T	T		B																	S	S		B															T	T
Template Predicted Secondary structure
Template SS confidence
		528	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.
		653	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	Y	S	G	L	P	V	A	E	V	T	P	R	E	A	Y	N	A	I	V	D	N	N	V	E	L	V	S	I	E	N	L	P	G	R	I	A	A	N	S	V	I	P	Y	P	P	G	I	P	M	L	L	S	G	E	N	F	G	D	K	N	S	P	Q	V	S	Y	L	R	S	L	Q	S	W	D	H	H	F	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	A	F	E	V	L	P	T	M	V	M	T	P	Y	A	A	F	Q	K	E	L	H	G	M	T	E	E	V	Y	L	D	E	M	V	G	R	I	N	A	N	M	I	L	P	Y	P	P	G	V	P	L	V	M	P	G	E	M	I	T	E	E	S	R	P	V	L	E	F	L	Q	M	L	C	E	I	G	A	H	Y	P
Template Known Secondary structure						S					S	S											T	T							G	G	G		T	T		B	B		S		B				T	T		S			B		T	T					G	G	G														T	T	S	S	T
Template Predicted Secondary structure
Template SS confidence
		608	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.
		733	.	.	.	.	.	.	740	.	.	.		.	.	.	.	.	.	750	.	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		G	F	E	H	E	T	E	G	T	E	I	.	I	D	G	I	Y	H	V	M	C	V	K
Query Conservation													.
Alig confidence													.
Template Conservation
Template Sequence		G	F	E	T	D	I	H	G	A	Y	R	Q	A	D	G	R	Y	T	V	K	V	L	K
Template Known Secondary structure		T							T					T	T	S
Template Predicted Secondary structure
Template SS confidence
		688	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710