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Job DescriptionP28629
Confidence99.62%DateWed Jan 25 15:20:47 GMT 2012
Rank179Aligned Residues305
% Identity13%Templatec3lvmB_
PDB info PDB header:transferaseChain: B: PDB Molecule:cysteine desulfurase; PDBTitle: crystal structure of e.coli iscs
Resolution2.05 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   206...210.........220... ......230.........240.. .......250.........260. ........270.......
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Query Sequence  AFGESEKYAARVFGADRS. WSVVVGTSGSNRTIMQACM. . . . TDNDVVVVDRNCHKSIEQG. . . LMLTGAKPVYMVPSRN
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Template Conservation       
  

   
     
    
 
 
   
   
          
                                
Template Sequence  AVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRN
Template Known Secondary structure  T

GGGSSTTTT

TTS
TT



TT
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   50.........60.........70.........80.........90.........100.........110.........120.........
 
   278.280.........290.........300.........310.........320... ......330.........340.........350......
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Query Sequence  RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY. DGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARF
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Template Sequence  G. . . . . . . . . . IIDLKELEAAMRDDT. . . . . . . . . . ILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSV. . . .
Template Known Secondary structure  S..........




TT..........

SB
TTT
BB

T

TTTT....
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   130 .........140..... ....150.........160.........170.........180.....
 
   357..360.........370.........380.........390.........400.. .......410.........420.........430....
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Query Sequence  NPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREG. . RGAINFSRFNQAYMMHATTSPLYAICASNDVA
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Template Sequence  . . . . . GKLPIDLSQLKVD. . . . LMSFSGHKIYGPKG. IGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEA
Template Known Secondary structure  .....TTS


TTTS

S....STTTTS
SS.

BTTB




SS
SS
TTTTT

S


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   186...190........ .200.........210.. .......220.........230.........240.........250.....
 
   435....440.........450.........460.........470.........480.........490.........500.........510....
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Query Sequence  VSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHP
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Template Sequence  YRIAKEE. MATEMERLRGLRNRLWNGIKDIE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  .TTST.................................................
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   256...260.. .......270.........280.....
 
   515....520.........530.........540.........550.........560........ .570........
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Query Sequence  GESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGI. . . . . . . . . . . . . . . . VPTRTTDFQI
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Template Conservation  .................                               
    
  
                      
Template Sequence  . . . . . . . . . . . . . . . . . EVYLNGDLEHGAPNILNVSFNYVEGESLIMALKDLAVSSGSALEPSYVLRALGLNDELAHSSI
Template Known Secondary structure  .................TS
SSSB
TTTTS
TTT
B







TT

T
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   286...290.........300.........310.........320.........330.........340........
 
   579580.........590.........600.........610.
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Query Sequence  MFLFSMGVTRGKWGTLVNTLCSFKRHYDANTPL
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Template Sequence  RFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPL
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TT

TT
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   354.....360.........370.........380......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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