Job Description P28629 Confidence 99.20% Date Wed Jan 25 15:20:47 GMT 2012 Rank 232 Aligned Residues 240 % Identity 14% Template c3f6tA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of aspartate aminotransferase (e.c. 2.6.1.1)2 (yp_194538.1) from lactobacillus acidophilus ncfm at 2.15 a3 resolution Resolution 2.15 Å

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		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.											.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.						.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Query Sequence		G	S	L	L	D	H	T	G	A	F	G	E	S	E	K	Y	A	A	R	V	.	.	.	.	.	.	.	.	.	.	F	G	A	D	R	S	W	S	V	V	V	G	T	S	G	S	N	R	T	I	M	Q	A	C	.	.	.	.	.	M	T	D	N	D	V	V	V	V	D	R	N	C	H	K	S	I	E	Q	G	L
Query Conservation																						.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Template Conservation
Template Sequence		N	N	Y	P	V	P	D	R	C	L	V	N	T	E	K	I	I	N	Y	F	L	Q	E	L	S	Y	K	D	A	N	L	A	E	Q	T	D	L	F	P	T	E	G	G	T	A	A	I	V	Y	A	F	H	S	L	A	E	N	H	L	L	K	K	G	D	K	I	A	I	N	E	P	I	F	T	P	Y	L	R	I	P
Template Known Secondary structure			S			S	S	S	S																		T	T	T				G	G	G																							T	T	S	S		T	T							S	S							T	S	G
Template Predicted Secondary structure
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.		.	.	.	.	.	.	.				.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.								.	.	.
Query SS confidence																																																													.								.	.	.
Query Sequence		M	L	T	G	A	K	P	V	Y	M	V	P	S	R	N	R	Y	G	I	I	G	P	I	Y	P	Q	E	M	Q	P	E	T	L	Q	K	K	I	S	E	S	P	L	T	K	D	K	A	G	Q	K	P	S	Y	C	V	V	T	N	C	.	T	Y	D	G	V	C	Y	.	.	.	N	A	K	E	A	Q	D	L	L	E
Query Conservation																																																													.								.	.	.
Alig confidence																						.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.									.								.	.	.
Template Conservation																						.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.
Template Sequence		E	L	K	D	Y	E	L	V	E	V	D	L	H	S	Y	E	K	N	D	W	.	.	.	.	.	.	E	I	E	P	N	E	I	E	K	L	K	D	P	S	I	.	.	.	.	.	.	.	.	.	.	K	A	L	I	V	V	N	P	T	N	P	T	S	K	E	F	D	T	N	A	L	N	A	I	K	Q	A	V	E
Template Known Secondary structure		G	G	G	G	S											T	T	T	T	S	.	.	.	.	.	.											S		T	T		.	.	.	.	.	.	.	.	.	.							S	S		T	T	T		B
Template Predicted Secondary structure																						.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.							230	.	.	.	.	.	.	.	.	.	240	.	.	.	.											.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		339	340		.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.									.	.	.
Predicted Secondary structure				.																																																																			.	.	.	.	.	.	.	.
Query SS confidence				.																																																																			.	.	.	.	.	.	.	.
Query Sequence		K	T	.	S	D	R	L	H	F	D	E	A	W	Y	G	Y	A	R	F	N	P	I	Y	A	D	H	Y	A	M	R	G	E	P	G	D	H	N	G	P	T	V	F	A	T	H	S	T	H	K	L	L	N	A	L	S	Q	A	S	Y	I	H	V	R	E	G	R	G	A	I	.	.	.	.	.	.	.	.	N	F	S
Query Conservation				.																																																																			.	.	.	.	.	.	.	.
Alig confidence				.										.	.	.																				.	.	.	.	.	.	.																										.	.		.	.	.	.	.	.	.	.
Template Conservation														.	.	.																				.	.	.	.	.	.	.																										.	.
Template Sequence		K	N	P	K	L	X	I	I	S	D	E	V	.	.	.	Y	G	A	F	V	P	N	F	K	S	I	Y	S	V	V	P	Y	N	T	.	.	.	.	.	.	.	X	L	V	Y	S	Y	S	L	F	G	C	T	G	W	R	L	G	V	I	A	L	N	E	K	N	.	.	V	F	D	D	N	I	A	H	L	D	K	V
Template Known Secondary structure				T	T								T	.	.	.	T	G	G	G	S	T	T								S	G	G	G		.	.	.	.	.	.	.										S		G	G	G									S	S		.	.								T	S
Template Predicted Secondary structure														.	.	.																				.	.	.	.	.	.	.																										.	.
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.				.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.								.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.			330	.	.	.	.	.	.	.	.	.	340	.
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.																																	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	F	N	Q	A	Y	M	M	H	A	T	T	S	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	A	I	C	A	S	N	D	V	A	V	S	M	M	D	G	N	S	G	L	S	L	T	Q	E	V	I	D	E	A	V	D	F
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation																																																																		.
Template Sequence		E	L	R	Q	L	H	K	R	Y	S	S	V	V	L	D	P	D	K	X	K	F	I	D	R	L	C	A	D	S	R	S	I	G	L	Y	H	T	A	G	L	S	T	P	Q	Q	I	X	E	A	L	F	S	X	T	H	L	L	T	S	T	N	G	G	S	.	D	D	P	Y	I	D	I	A	R	K	L	V	S	E	R
Template Known Secondary structure												T	T		S		G	G	G												T	T	T	T	T	G	G	G		S																		T	T		B	G	G	G	T	.	B
Template Predicted Secondary structure																																																																		.
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.		.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
		458	.	460	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	A	M	A	R	L	Y	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	D	Q	L	H	D	A	X	Q
Template Known Secondary structure										T
Template Predicted Secondary structure
Template SS confidence
		422	.	.	.	.	.	.	.	430

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions