Job Description P28629 Confidence 97.41% Date Wed Jan 25 15:20:47 GMT 2012 Rank 319 Aligned Residues 123 % Identity 14% Template c3f6cB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:positive transcription regulator evga; PDBTitle: crystal structure of n-terminal domain of positive transcription2 regulator evga from escherichia coli Resolution 1.45 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		M	K	V	L	I	V	E	S	E	F	L	H	Q	D	T	W	V	G	N	A	V	E	R	L	A	D	A	L	S	Q	Q	N	V	T	V	I	.	K	S	T	S	F	D	D	G	F	A	I	L	S	S	N	E	A	I	D	C	L	M	F	S	Y	Q	M	E	H	P	D	E	H	Q	N	V	R	Q	L	I	G	K	L
Query Conservation																																						.
Alig confidence															.	.	.	.	.	.	.	.																.																.													.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.																																.													.	.	.	.
Template Sequence		L	N	A	I	I	I	D	D	H	P	L	A	I	.	.	.	.	.	.	.	.	A	A	I	R	N	L	L	I	K	N	D	I	E	I	L	A	E	L	T	E	G	G	S	A	V	Q	R	V	E	T	L	.	K	P	D	I	V	I	I	D	V	D	I	P	.	.	.	.	G	V	N	G	I	Q	V	L	E	T	L
Template Known Secondary structure															.	.	.	.	.	.	.	.										T	T								S	S	S	T	T									.			S						T	T		S	.	.	.	.	S	S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.																																.													.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.									.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.					.	.	.	60	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	E	R	Q	Q	N	V	P	V	F	L	L	G	D	R	E	K	A	L	A	A	M	D	R	D	L	L	E	L	V	D	E	F	A	W	I	L	E	D	T	A	D	F	I	A	G	R	A	V	A	A	M	T	R	Y	R	Q	Q	L	L	P	P
Query Conservation
Alig confidence																		.	.																										.										.	.
Template Conservation																		.	.																										.										.	.
Template Sequence		R	K	R	Q	Y	S	G	I	I	I	I	V	S	A	K	D	.	.	H	F	Y	G	K	H	C	A	D	A	G	A	N	G	F	V	S	K	K	E	G	M	N	N	I	.	I	A	A	I	E	A	A	K	N	.	.	G	Y	C	Y	F	P	F
Template Known Secondary structure				T	T			S										.	.		S	T							T	T		S					G	G	G		T				.									T	.	.	T			B
Template Predicted Secondary structure																		.	.																										.										.	.
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.			.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.			.	.	120	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions