Job Description P28629 Confidence 99.80% Date Wed Jan 25 15:20:47 GMT 2012 Rank 84 Aligned Residues 298 % Identity 14% Template c3f0hA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase; PDBTitle: crystal structure of aminotransferase (rer070207000802) from2 eubacterium rectale at 1.70 a resolution Resolution 1.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		206	.	.	.	210	.	.	.	.	.	.	.	.	.				220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.			.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure																.	.	.																																							.	.
Query SS confidence																.	.	.																																							.	.
Query Sequence		A	F	G	E	S	E	K	Y	A	A	R	V	F	G	.	.	.	A	D	R	S	W	S	V	V	V	G	T	S	G	S	N	R	T	I	M	Q	A	C	M	T	D	N	D	V	V	V	V	D	R	N	C	H	K	S	.	.	I	E	Q	G	L	M	L	T	G	A	K	P	V	Y	M	V	P	S	R	N	R	Y	G
Query Conservation																.	.	.																																							.	.
Alig confidence																.	.	.																																							.	.																						.	.
Template Conservation																																																																																.	.
Template Sequence		T	X	L	E	N	E	K	F	X	L	E	Y	A	K	A	P	E	G	S	K	A	V	F	X	T	C	S	S	T	G	S	X	E	A	V	V	X	N	C	F	T	K	K	D	K	V	L	V	I	D	G	G	S	F	G	H	R	F	V	Q	L	C	E	I	H	E	I	P	Y	V	A	L	K	L	E	H	G	K	.	.
Template Known Secondary structure															T			T	T							S	S																T	T								S	S													T	T										T	T		.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.		.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		I	I	G	P	I	Y	P	Q	E	M	Q	P	E	T	L	Q	K	K	I	S	E	S	P	L	T	K	D	K	A	G	Q	K	P	S	Y	C	V	V	T	N	C	T	Y	.	D	G	V	C	Y	N	A	K	E	A	Q	D	L	L	E	K	T	S	D	R	L	H	F	D	E	A	W	Y	G	Y	A	R	F	N	P	I
Query Conservation																																													.
Alig confidence		.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.											.
Template Conservation		.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	K	L	T	K	E	K	L	Y	E	Y	D	N	Q	N	F	.	.	.	.	.	.	.	.	.	.	T	G	L	L	V	N	V	D	E	T	S	T	A	V	L	Y	D	T	X	X	I	G	E	F	C	K	K	N	N	X	F	F	V	C	D	C	V	S	A	F	L	A	D	P	F	N	X
Template Known Secondary structure		.	.	.	.	.	.	.	.									T	T	T	T	S			.	.	.	.	.	.	.	.	.	.							S			T	T	T	T															T	T								T	T	T	T	T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.
Template SS confidence
										112	.	.	.	.	.	.	.	120	.	.	.	.	.	.											.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400													.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	A	D	H	Y	A	M	R	G	E	P	G	D	H	N	G	P	T	V	F	A	T	H	S	T	H	K	L	L	N	A	L	S	Q	A	S	Y	I	H	V	R	.	.	.	.	.	.	.	.	.	.	.	.	E	G	R	G	A	I	N	F	S	R	F	N	Q	A	Y	M	M	H	A	T	T	S	P	L	Y	A	I
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.						.	.	.	.	.	.	.									.														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.						.	.	.	.	.	.	.									.
Template Sequence		N	.	.	.	.	.	.	E	C	G	A	D	.	.	.	.	.	.	.	V	X	I	T	G	S	Q	V	.	L	A	C	P	P	G	I	S	V	I	V	L	A	P	R	G	V	E	R	V	E	K	S	K	V	R	T	X	Y	F	D	L	K	D	A	L	K	N	Q	E	R	G	Q	T	P	F	T	P	A	V	G	I
Template Known Secondary structure			.	.	.	.	.	.			T		S	.	.	.	.	.	.	.									.					S	S																T						S	T	T										T	T	T			S	S
Template Predicted Secondary structure			.	.	.	.	.	.						.	.	.	.	.	.	.									.
Template SS confidence
		174							.	.	.	.	.								180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	A	S	N	D	V	A	V	S	M	M	D	G	N	S	G	L	S	L	T	Q	E	V	I	D	E	A	V	D	F	R	Q	A	M	A	R	L	Y	K	E	F	T	A	D	G	S	W	F	F	K	P	W	N	K	E	V	V	T	D	P	Q	T	G	K	T	Y	D	F	A	D	A	P	T	K	L	L	T	T	V	Q
Query Conservation
Alig confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	L	Q	I	N	E	R	L	K	E	I	K	K	H	G	G	A	D	A	E	V	A	R	I	A	S	Q	A	A	D	F	R	A	K	I	K	D	L	P	F	E	L	V	S	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure															T	T																				T	T	T	S	S						S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		508	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.					.	.	.	.	.	.	.	580	.	.	.
Predicted Secondary structure																																																																			.	.	.	.
Query SS confidence																																																																			.	.	.	.
Query Sequence		D	C	W	V	M	H	P	G	E	S	W	H	G	F	K	D	I	P	D	N	W	S	M	L	D	P	I	K	V	S	I	L	A	P	G	M	G	E	D	G	E	L	E	E	T	G	V	P	A	A	L	V	T	A	W	L	G	R	H	G	I	V	P	T	R	.	.	.	.	T	T	D	F	Q	I	M	F	L	F	S
Query Conservation																																																																			.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.																.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	P	A	N	G	V	T	S	V	H	P	T	T	A	N	A	Y	D	.	.	.	.	.	.	.	.	I	F	L	K	L	K	D	E	Y	G	I	W	I	C	P	N	G	G	E	X	K	D	T	I	F	R	V	G	H	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	B	B	T	T							S	S	S					.	.	.	.	.	.	.	.									S	S								G	G	G	T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template SS confidence
																										286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.									.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		584	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	G	V	T	R	G	K	W	G	T	L	V	N	T	L	C	S	F	K	R	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	A	L	T	H	E	D	N	T	T	L	V	N	A	F	K	D	L	Q	K	R
Template Known Secondary structure		S	S																			T
Template Predicted Secondary structure
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions