Return to main results Retrieve Phyre Job Id

Job DescriptionP28629
Confidence99.41%DateWed Jan 25 15:20:47 GMT 2012
Rank221Aligned Residues375
% Identity15%Templatec3eleB_
PDB info PDB header:transferaseChain: B: PDB Molecule:amino transferase; PDBTitle: crystal structure of amino transferase (rer070207001803) from2 eubacterium rectale at 2.10 a resolution
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   131........140.........150.........160. ........170.........180.........190.........200.........
Predicted Secondary structure 












.
























Query SS confidence 






























.















































Query Sequence  MTRYRQQLLPPLFSALMKYSDIHEYSWAAPG. HQGGVGFTKTPAGRFYHDYYGENLFRTDMGIERTSLGSLLDHTGAFGE
Query Conservation     
     


  

  
      


 

.

 
     
     
  
 

     


 
  




  
 
 
 
Alig confidence 






























.





























.
















Template Conservation            
 

                 

 
  
 
       
  
           .    
    
   

 
Template Sequence  ESXYQLGSVRSAIRELFEYGKKRAAIVGKENVYDFSIGNPSIPAPQIVNDTIKELVTDYDSV. ALHGYTSAQGDVETRAA
Template Known Secondary structure  S


GGG







S


S
.S


TT

Template Predicted Secondary structure 
























.










Template SS confidence 















































































   5....10.........20.........30.........40.........50.........60...... ...70.........80...
 
   210.........220... ......230.........240... ......250.........260.........270.........280.....
Predicted Secondary structure 



...



.




















Query SS confidence 













. . .



















.









































Query Sequence  SEKYAARVFGADRS. . . WSVVVGTSGSNRTIMQACMT. DNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRNRYGIIGPI
Query Conservation 

 


  


  
... 






 

 
 
 
   . 

 


 






  

 



 



 
  
    

 
Alig confidence 













...



















.





































....
Template Conservation 

       
     
 
  
 
 
 

      
    

 

   
            
     
         ....
Template Sequence  IAEFLNNTHGTHFNADNLYXTXGAAASLSICFRALTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPADTEHFQI. . . .
Template Known Secondary structure 




GGGSS

STT
SS

TTTT



TTTSS
....
Template Predicted Secondary structure 



























....
Template SS confidence 















































































   84.....90.........100.........110.........120.........130.........140.........150.........
 
   286...290.........300.........310.........320.... ..... 330.........340. ........350.....
Predicted Secondary structure 

















.

...

......








Query SS confidence 






































.




. . .











. . . . . .













Query Sequence  YPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYD. GVCYN. . . AKEAQDLLEKTS. . . . . . DRLHFDEAWYGYAR
Query Conservation      
    
   
   
          









 .

  
...
  
    
   ......  









  
Alig confidence  .....












..........










.




...











......









.


Template Conservation  .....             ..........  
    
 



       
  
             
          .   
Template Sequence  . . . . . DFDALEERINAHT. . . . . . . . . . RGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYR. EIV
Template Known Secondary structure  .....
T

TT..........
SS
TTT




TS


TTT.T
B
Template Predicted Secondary structure  .....






..........

























.


Template SS confidence 















































































   160.........170.. .......180.........190.........200.........210.........220 ...
 
   356...360.........370.........380......... 390.........400.........410.........420.........430....
Predicted Secondary structure 



























.

















Query SS confidence 

































.












































Query Sequence  FNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLN. ALSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVA
Query Conservation 
 
   
 


  


       









 .



 
 


      

      

   






 





 
Alig confidence 















.......










.













..




























Template Conservation                  .......
   
 

     




        ..                             
Template Sequence  YDGIKVPFVTKYYDNT. . . . . . . LVCYSYSKSLSLPGERIGYVLVPDEV. . YDKAELYAAVCGAGRALGYVCAPSLFQKX
Template Known Secondary structure 
TT




GGGT
SS.......STTTSS
GGG



TTS..TTTT


S
Template Predicted Secondary structure 














.......















..





Template SS confidence 















































































   224.....230......... 240.........250.........260..... ....270.........280.........290....
 
   435....440.........450.........460.........470.........480.........490.........500.........510....
Predicted Secondary structure 













































Query SS confidence 















































































Query Sequence  VSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHP
Query Conservation 
  
  
 
  
    
  
  

  
              
  
 
                                 
Alig confidence 






..

















.....................................................
Template Conservation         ..                 
.....................................................
Template Sequence  IVKCQGA. . TGDINAYKENRDLLYEGL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TT
TT
..


.....................................................
Template Predicted Secondary structure  .......................................................
Template SS confidence 















































































   295....300. ........310.........
 
   515....520.........530.........540.........550.........560.........570........ .580.........590..
Predicted Secondary structure 








































..




Query SS confidence 































































. .













Query Sequence  GESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTTDFQI. . MFLFSMGVTRGKWG
Query Conservation     


          


 



   
 
  
     
  
  
  

   

  
      
..
 
 


 
     
Alig confidence  .................














































..













Template Conservation  .................   
     
  
                  
   

 
 


 
     



     
 
 
Template Sequence  . . . . . . . . . . . . . . . . . TRIGYHCFKPDGAFYXFVKALEDDSNAFCEKAKEEDVLIVAADGFGCPGWVRISYCVDREXIK
Template Known Secondary structure  .................T



SBSS
SSS
TT
GGGGT
TT

S
Template Predicted Secondary structure  .................



























Template SS confidence 















































































   320.........330.........340.........350.........360.........370.........380..
 
   593......600.......
Predicted Secondary structure 
Query SS confidence 














Query Sequence  TLVNTLCSFKRHYDA
Query Conservation   
  

  
      
Alig confidence 














Template Conservation       
   
     
Template Sequence  HSXPAFEKIYKKYNK
Template Known Secondary structure 

Template Predicted Secondary structure 

Template SS confidence 














   383......390.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions