Job Description P28629 Confidence 99.61% Date Wed Jan 25 15:20:47 GMT 2012 Rank 183 Aligned Residues 312 % Identity 13% Template c3dxvA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:alpha-amino-epsilon-caprolactam racemase; PDBTitle: the crystal structure of alpha-amino-epsilon-caprolactam racemase from2 achromobacter obae Resolution 2.21 Å

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		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.				.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240			.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.																							.	.
Query SS confidence																		.	.	.																							.	.
Query Sequence		H	T	G	A	F	G	E	S	E	K	Y	A	A	R	V	F	.	.	.	G	A	D	R	S	W	S	V	V	V	G	T	S	G	S	N	R	T	I	M	Q	A	.	.	C	M	T	D	N	D	V	V	V	V	D	R	N	C	H	K	S	I	E	Q	G	L	M	L	T	G	A	K	P	V	Y	M	V	P	S	R	N
Query Conservation																		.	.	.																							.	.
Alig confidence																		.	.	.																							.	.
Template Conservation
Template Sequence		S	N	A	P	A	V	T	L	A	E	R	L	L	A	S	F	P	G	E	G	T	H	K	I	W	F	G	H	S	G	S	D	A	N	E	A	A	Y	R	A	I	V	K	A	T	G	R	S	G	V	I	A	F	A	G	A	Y	H	G	C	T	V	G	S	M	A	F	S	G	L	I	L	L	P	Y	P	D	P	Y	R
Template Known Secondary structure																T	T	T		T	T	T							S	S																	S								T	T					S	S					T	T											S	S	S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.			.	.	.	.					.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure																																																.	.					.	.	.	.
Query SS confidence																																																.	.					.	.	.	.
Query Sequence		R	Y	G	I	I	G	P	I	Y	P	Q	E	M	Q	P	E	T	L	Q	K	K	I	S	E	S	P	L	T	K	D	K	A	G	Q	K	P	S	Y	C	V	V	T	N	C	T	Y	.	.	D	G	V	C	.	.	.	.	Y	N	A	K	E	A	Q	D	L	L	E	K	T	S	D	R	L	H	F	D	E	A	W	Y
Query Conservation																																																.	.					.	.	.	.
Alig confidence			.	.																								.	.	.	.	.	.	.	.													.	.					.	.	.	.
Template Conservation			.	.																								.	.	.	.	.	.	.	.
Template Sequence		P	.	.	Y	R	N	D	P	T	G	D	A	I	L	T	L	L	T	E	K	L	A	A	V	P	A	.	.	.	.	.	.	.	.	G	S	I	G	A	A	F	I	E	P	I	Q	S	D	G	G	L	I	V	P	P	D	G	F	L	R	K	F	A	D	I	C	R	A	H	G	I	L	V	V	C	D	E	V	K	V
Template Known Secondary structure			.	.	B	T	T	B	T	T	S													T	S		T	.	.	.	.	.	.	.	.	T									S	S	B	S	T	T	T	S	B				T	T												T	T								T	T	T
Template Predicted Secondary structure			.	.																								.	.	.	.	.	.	.	.
Template SS confidence
		173			.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.									.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Y	A	R	F	N	P	I	Y	A	D	H	Y	A	M	R	G	E	P	G	D	H	N	G	P	T	V	F	A	T	H	S	T	H	K	L	L	N	A	L	S	Q	A	S	Y	I	H	V	R	E	G	R	G	A	I	N	F	S	R	F	N	Q	A	Y	M	M	H	A	T	T	S	P	L	Y	A	I	C	A	S	N
Query Conservation
Alig confidence											.											.	.	.	.	.	.	.						.	.																			.	.						.	.	.	.
Template Conservation											.											.	.	.	.	.	.	.						.	.																			.	.						.	.	.	.
Template Sequence		G	L	A	R	S	G	R	L	H	.	C	F	E	H	E	G	F	V	P	D	.	.	.	.	.	.	.	I	L	V	L	G	.	.	K	G	L	G	G	G	L	P	L	S	A	V	I	A	P	A	E	I	.	.	L	D	C	A	S	.	.	.	.	A	F	A	M	Q	T	L	H	G	N	P	I	S	A	A	A	G
Template Known Secondary structure			T	T	T	T	S	S	S	S	.	G	G	G	G	T	T				S	.	.	.	.	.	.	.						.	.	G	G	G	G	T	T	S												.	.		T	S		S	.	.	.	.	S	S	S			T	T	T	T
Template Predicted Secondary structure											.											.	.	.	.	.	.	.						.	.																			.	.						.	.	.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.		.	.	.	.	.	.	.	.	260	.								.	.	.	.	.			.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.			.	.	.	.	.					290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	A	V	S	M	M	D	G	N	S	G	L	S	L	T	Q	E	V	I	D	E	A	V	D	F	R	Q	A	M	A	R	L	Y	K	E	F	T	A	D	G	S	W	F	F	K	P	W	N	K	E	V	V	T	D	P	Q	T	G	K	T	Y	D	F	A	D	A	P	T	K	L	L	T	T	V	Q	D	C	W	V
Query Conservation
Alig confidence												.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	V	L	E	T	I	D	R	D	.	.	.	D	L	P	A	M	A	E	R	K	G	R	L	L	R	D	G	L	S	E	L	A	K	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											T	.	.	.	T																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure												.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		307	.	.	310	.	.	.	.	.	.				.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		512	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.								.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.			.	.	.	.	.	580	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.																								.	.
Query SS confidence																																										.	.	.	.	.	.	.																								.	.
Query Sequence		M	H	P	G	E	S	W	H	G	F	K	D	I	P	D	N	W	S	M	L	D	P	I	K	V	S	I	L	A	P	G	M	G	E	D	G	E	L	E	E	.	.	.	.	.	.	.	T	G	V	P	A	A	L	V	T	A	W	L	G	R	H	G	I	V	P	T	R	T	T	.	.	D	F	Q	I	M	F	L	F
Query Conservation																																										.	.	.	.	.	.	.																								.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.																								.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	P	L	I	G	D	I	R	G	R	G	L	A	C	G	M	E	L	V	C	D	R	Q	S	R	E	P	A	R	A	E	T	A	K	L	I	Y	R	A	Y	Q	L	G	L	V	V	Y	Y	V	G	M	N	G	N	V	L	E	F	T	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T								T	T										T	T	T	T																		T							S	T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																						340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	M	G	V	T	R	G	K	W	G	T	L	V	N	T	L	C	S	F	K	R	H	Y	D	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	L	T	I	T	E	T	D	I	H	K	A	L	D	L	L	D	R	A	F	S	E	L	S	A
Template Known Secondary structure			T	T																			T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions