Job Description P28629 Confidence 97.15% Date Wed Jan 25 15:20:47 GMT 2012 Rank 332 Aligned Residues 118 % Identity 12% Template c3cnbC_ PDB info PDB header:dna binding protein Chain: C: PDB Molecule:dna-binding response regulator, merr family; PDBTitle: crystal structure of signal receiver domain of dna binding response2 regulator protein (merr) from colwellia psychrerythraea 34h Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.			.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.
Query SS confidence																																	.	.
Query Sequence		M	K	V	L	I	V	E	S	E	F	L	H	Q	D	T	W	V	G	N	A	V	E	R	L	A	D	A	L	S	Q	Q	.	.	N	V	T	V	I	K	S	T	S	F	D	D	G	F	A	I	L	S	S	N	E	A	I	D	C	L	M	F	S	Y	Q	M	E	H	P	D	E	H	Q	N	V	R	Q	L	I	G	K
Query Conservation																																	.	.
Alig confidence															.	.	.	.	.	.	.	.											.	.																						.													.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.																																		.													.	.	.	.
Template Sequence		F	S	I	L	I	I	E	D	D	K	E	F	A	.	.	.	.	.	.	.	.	D	M	L	T	Q	F	L	E	N	L	F	P	Y	A	K	I	K	I	A	Y	N	P	F	D	A	G	D	L	L	H	T	V	K	.	P	D	V	V	M	L	D	L	M	M	V	G	.	.	.	.	M	D	G	F	S	I	C	H	R
Template Known Secondary structure									S						.	.	.	.	.	.	.	.												T	T	S							S											T		.		S						T	T		T	T	.	.	.	.	S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.																																		.													.	.	.	.
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.	.	.									.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.					.	.	.	.	.	.	130	.	.
		79	80	.			.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence		L	H	E	.	.	R	Q	Q	N	V	P	V	F	L	L	G	D	R	E	K	A	L	A	A	M	D	R	D	L	L	E	L	V	D	E	F	A	W	I	L	E	D	T	A	D	F	I	A	G	R	A	V	A	A	M	T	R
Query Conservation					.	.
Alig confidence					.	.																	.																									.
Template Conservation																							.																									.
Template Sequence		I	K	S	T	P	A	T	A	N	I	I	V	I	A	M	T	G	A	L	T	D	.	D	N	V	S	R	I	V	A	L	G	A	E	T	C	F	G	K	P	L	N	F	T	L	L	.	E	K	T	I	K	Q	L	V	E	Q
Template Known Secondary structure				T	S	T	T	T	T	T	S							S	S				.									T	T		S					S	S							.
Template Predicted Secondary structure																							.																									.
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.		.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.		.	.	180	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions