Job Description P28629 Confidence 99.77% Date Wed Jan 25 15:20:47 GMT 2012 Rank 91 Aligned Residues 211 % Identity 14% Template c3aemD_ PDB info PDB header:lyase Chain: D: PDB Molecule:methionine gamma-lyase; PDBTitle: reaction intermediate structure of entamoeba histolytica methionine2 gamma-lyase 1 containing michaelis complex and methionine imine-3 pyridoxamine-5'-phosphate Resolution 2.20 Å

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		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.					.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure																																																								.	.	.	.
Query SS confidence																																																								.	.	.	.
Query Sequence		G	E	S	E	K	Y	A	A	R	V	F	G	A	D	R	S	W	S	V	V	V	G	T	S	G	S	N	R	T	I	M	Q	A	C	M	T	D	N	D	V	V	V	V	D	R	N	C	H	K	S	I	E	Q	G	.	.	.	.	L	M	L	T	G	A	K	P	V	Y	M	V	P	S	R	N	R	Y	G	I	I	G
Query Conservation																																																								.	.	.	.
Alig confidence																								.																																.	.	.	.															.	.	.	.	.	.	.	.
Template Conservation																								.																																																		.	.	.	.	.	.	.	.
Template Sequence		E	Q	F	E	E	M	V	C	S	I	E	G	A	A	G	S	A	A	F	G	S	G	.	M	G	A	I	S	S	S	T	L	A	F	L	Q	K	G	D	H	L	I	A	G	D	T	L	Y	G	C	T	V	S	L	F	T	H	W	L	P	R	F	G	I	E	V	D	L	I	D	T	S	.	.	.	.	.	.	.	.
Template Known Secondary structure													T		S						S	S		.									T	T	T			T	T							S	S																T	T								T	T	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.																																																		.	.	.	.	.	.	.	.
Template SS confidence
		1562	.	.	.	.	.	.	.	1570	.	.	.	.	.	.	.	.	.	1580	.	.	.		.	.	.	.	.	.	1590	.	.	.	.	.	.	.	.	.	1600	.	.	.	.	.	.	.	.	.	1610	.	.	.	.	.	.	.	.	.	1620	.	.	.	.	.	.	.	.	.	1630	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.		.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		P	I	Y	P	Q	E	M	Q	P	E	T	L	Q	K	K	I	S	E	S	P	L	T	K	D	K	A	G	Q	K	P	S	Y	C	V	V	T	N	C	.	T	Y	D	G	V	C	Y	N	A	K	E	A	Q	D	L	L	E	K	T	S	D	R	L	H	F	D	E	A	W	Y	G	Y	A	R	F	N	P	I	Y	A	D
Query Conservation																																								.
Alig confidence		.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.									.																																							.	.	.
Template Conservation		.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.																																																.	.	.
Template Sequence		.	.	.	.	.	.	.	D	V	E	K	V	K	A	A	W	K	P	N	T	.	.	.	.	.	.	.	.	.	.	K	M	V	Y	L	E	S	P	A	N	P	T	C	K	V	S	D	I	K	G	I	A	V	V	C	H	E	R	G	A	R	L	V	V	D	A	T	F	T	S	P	C	F	L	K	P	L	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	S										T	T		.	.	.	.	.	.	.	.	.	.							S	S		T	T	T																	T								T	T	T		T	T	T			G	G	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.																																																.	.	.
Template SS confidence
									1633	.	.	.	.	.	.	1640	.	.	.	.	.											.	.	.	.	1650	.	.	.	.	.	.	.	.	.	1660	.	.	.	.	.	.	.	.	.	1670	.	.	.	.	.	.	.	.	.	1680	.	.	.	.	.	.	.	.	.	1690	.	.
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.			.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure																																	.	.
Query SS confidence																																	.	.
Query Sequence		H	Y	A	M	R	G	E	P	G	D	H	N	G	P	T	V	F	A	T	H	S	T	H	K	L	L	N	A	L	S	Q	.	.	A	S	Y	I	H	V	R	E	G	R	G	A	I	N	F	S	R	F	N	Q	A	Y	M	M	H	A	T	T	S	P	L	Y	A	I	C	A	S	N	D	V	A	V	S	M	M	D	G
Query Conservation																																	.	.
Alig confidence		.	.	.	.						.	.	.	.	.	.	.																.	.										.	.	.																	.	.	.	.	.	.
Template Conservation		.	.	.	.						.	.	.	.	.	.	.																											.	.	.																	.	.	.	.	.	.
Template Sequence		.	.	.	.	E	L	G	A	D	.	.	.	.	.	.	.	I	A	L	H	S	V	S	K	Y	I	N	G	H	G	D	V	I	G	G	V	S	S	A	K	T	A	.	.	.	E	D	I	A	T	I	K	F	Y	R	K	D	A	G	S	L	.	.	.	.	.	.	M	A	P	M	D	A	F	L	C	A	R	G	M
Template Known Secondary structure		.	.	.	.	G	G	T		S	.	.	.	.	.	.	.						T	T	T	T	T	T		S	S	S									S	S		.	.	.																	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.						.	.	.	.	.	.	.																											.	.	.																	.	.	.	.	.	.
Template SS confidence
						1693	.	.	.	.								.	.	1700	.	.	.	.	.	.	.	.	.	1710	.	.	.	.	.	.	.	.	.	1720	.	.	.				.	.	.	.	.	.	1730	.	.	.	.	.	.	.	.	.							1740	.	.	.	.	.	.	.	.	.	1750	.	.
		441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	S	G	L	S	L	T	Q	E	V	I	D	E	A	V	D	F	R	Q	A	M	A	R	L	Y	K	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	T	L	P	I	R	M	Q	I	H	M	E	N	G	L	K	V	A	K	F	L	E	Q	H	E	K	I
Template Known Secondary structure		T	T																					T		T	T
Template Predicted Secondary structure
Template SS confidence
		1753	.	.	.	.	.	.	1760	.	.	.	.	.	.	.	.	.	1770	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions