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Job DescriptionP28629
Confidence99.69%DateWed Jan 25 15:20:47 GMT 2012
Rank151Aligned Residues310
% Identity18%Templatec2zc0C_
PDB info PDB header:transferaseChain: C: PDB Molecule:alanine glyoxylate transaminase; PDBTitle: crystal structure of an archaeal alanine:glyoxylate aminotransferase
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   201........210......... 220.........230.........240.........250.........260.........270...
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Query Sequence  LDHTGAFGESEKYAARVFG. . . . . . . ADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMV
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Template Sequence  YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVITENPSYINTLLAFEQLGAKIEGVP
Template Known Secondary structure 


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   71........80.........90.........100.........110.........120.........130.........140.........150
 
   274.....280.........290.........300.........310......... 320......... 330.........340........
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Query Sequence  PSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVT. . . . NCTYDGVCYN. AKEAQDLLEKTSDRLHFDE
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Template Sequence  VD. . . . . . . . . . . NDGMRVDLLEEKIKELK. . . . AKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDT
Template Known Secondary structure  ...........TT
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   151. .......160......... 170.........180.........190.........200.........210.....
 
   349350.........360.........370.........380.........390.........400.........410.........420........
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Query Sequence  AWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAIC
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Template Sequence  AYN. FMRYEGGDIVPLKALDNEG. . . . . RVIVAGTLSKVLGTGFRIGWII. . . . . . . AEGEILKKVLMQKQPIDFCAPAI
Template Known Secondary structure  TTT.T
BSS
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   216.. .220.........230....... ..240.........250......... 260.........270.........280..
 
   429430.........440.........450.........460.........470.........480.........490.........500........
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Query Sequence  ASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQD
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Template Sequence  SQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENH. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TTTTTT........................................
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   283......290.........300.........310.........320..
 
   509510.........520.........530..... ....540.........550.........560.........570 .......
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Query Sequence  CWVMHPGESWHGFKDIPDNWSMLDPIK. . . VSILAPGMGEDGELEETGVPAALVTAWLGRHGIVP. . . . . . . . TRTTDFQ
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Template Sequence  . . . . . . . . . . . . . . . . LPNAEFTKPIAGMFVMFFLPE. GADGIS. . . . . . . . FANELMEREGVVVVPGKPFYTDESGKNA
Template Known Secondary structure  ................
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SBSS
ST.T

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   323......330.........340... ...... 350.........360.........370.......
 
   578.580.........590.........600....
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Query Sequence  IMFLFSMGVTRGKWGTLVNTLCSFKRH
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Template Sequence  IRLNFS. RPSKEEIPIGIKKLAKLYKE
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TTT
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   378.380... ......390.........400...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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